Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 0.0e+00 1149.8 618 100.0
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 2.3e-207 726.1 600 71.8
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 5.3e-204 714.9 601 71.9
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 9.4e-161 571.2 601 60.9
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 4.9e-109 399.4 633 46.0
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 3.9e-106 389.8 622 45.2
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 5.4e-100 369.4 646 44.6
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 1.7e-98 364.4 642 44.5
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 6.6e-90 335.9 550 44.5
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 2.1e-88 330.9 626 42.3
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 4.2e-84 316.6 367 55.6
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 1.2e-83 315.1 635 42.0
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 1.0e-82 312.0 641 39.0
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 1.3e-82 311.6 419 51.1
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 5.1e-82 309.7 613 43.4
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 5.1e-82 309.7 630 41.7
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 9.6e-81 305.4 624 41.7
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 4.8e-80 303.1 630 38.9
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 2.4e-79 300.8 579 42.3
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 2.2e-77 294.3 625 38.4
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 2.2e-77 294.3 426 50.0
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 2.9e-77 293.9 631 40.4
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 4.9e-77 293.1 624 43.9
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 4.9e-77 293.1 417 51.1
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 6.4e-77 292.7 631 39.1
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 1.4e-76 291.6 634 38.5
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 2.5e-76 290.8 634 38.0
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 5.5e-76 289.7 634 38.6
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 5.5e-76 289.7 637 40.0
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 9.3e-76 288.9 634 38.6
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 1.2e-75 288.5 432 46.1
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 1.6e-75 288.1 662 36.6
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 1.3e-74 285.0 622 37.8
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 8.7e-74 282.3 685 37.2
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 1.9e-73 281.2 372 51.1
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 5.7e-73 279.6 620 39.0
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 1.4e-71 275.0 633 37.4
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 6.9e-71 272.7 373 49.6
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 6.9e-71 272.7 638 37.3
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 4.5e-70 270.0 331 51.1
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 2.9e-69 267.3 620 38.9
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 3.8e-69 266.9 622 41.2
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 1.4e-68 265.0 631 38.2
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 4.2e-68 263.5 622 36.8
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 9.3e-68 262.3 622 38.7
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 1.3e-66 258.5 623 37.7
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 1.3e-66 258.5 627 37.2
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 3.0e-66 257.3 617 36.6
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 1.9e-65 254.6 619 36.8
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 3.3e-65 253.8 639 37.1
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 1.6e-64 251.5 627 36.8
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 8.2e-64 249.2 633 37.4
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 8.2e-64 249.2 408 45.6
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 2.4e-63 247.7 392 45.4
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 2.0e-62 244.6 443 41.1
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 3.4e-62 243.8 636 36.8
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 1.3e-61 241.9 622 35.2
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 2.2e-61 241.1 604 36.6
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 1.1e-60 238.8 632 35.0
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 3.6e-59 233.8 621 34.9
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 7.4e-57 226.1 613 35.9
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 1.0e-53 215.7 376 42.8
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 1.1e-52 212.2 635 35.1
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 4.2e-52 210.3 237 57.8
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 1.0e-50 205.7 406 41.4
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 3.0e-50 204.1 684 32.0
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 3.9e-50 203.8 327 44.0
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 2.0e-49 201.4 403 40.2
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 2.0e-49 201.4 387 40.3
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 7.4e-49 199.5 649 31.3
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 1.7e-48 198.4 639 31.9
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 2.2e-48 198.0 407 41.0
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 2.2e-48 198.0 640 32.3
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 3.7e-48 197.2 640 32.8
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 2.4e-47 194.5 630 34.9
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 7.0e-47 193.0 399 40.9
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 4.5e-46 190.3 616 30.7
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 6.5e-45 186.4 646 30.8
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 7.2e-44 183.0 193 53.4
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 1.6e-43 181.8 275 42.2
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 3.6e-43 180.6 456 34.9
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 1.4e-42 178.7 383 37.9
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 6.7e-42 176.4 620 29.2
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 1.1e-41 175.6 649 31.3
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 1.7e-40 171.8 141 60.3
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 2.8e-40 171.0 155 59.4
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 2.8e-40 171.0 189 51.3
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 3.7e-40 170.6 455 32.5
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 4.8e-40 170.2 227 47.6
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 1.8e-39 168.3 425 33.2
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 1.2e-38 165.6 382 38.5
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.2e-38 165.6 187 49.7
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-38 165.6 187 49.7
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 2.0e-38 164.9 187 49.7
CANSAT54G0676 Cannabis sativa HOM05D005763 ORTHO05D005970 2.6e-38 164.5 126 64.3
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 3.5e-38 164.1 422 33.4
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.9e-37 161.0 153 52.9
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 2.9e-37 161.0 224 44.2
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.9e-37 161.0 237 51.1
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 8.5e-37 159.5 170 51.8
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 1.1e-36 159.1 150 55.3
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.1e-36 159.1 190 48.9
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.5e-36 158.7 190 48.9
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 3.2e-36 157.5 155 52.3
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 3.2e-36 157.5 472 33.5
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 5.5e-36 156.8 328 36.0
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 7.2e-36 156.4 475 32.8
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 7.2e-36 156.4 195 49.2
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 1.6e-35 155.2 259 40.9
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 3.6e-35 154.1 175 48.6
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 6.1e-35 153.3 152 53.3
COL.COLO4_29043 Corchorus olitorius HOM05D005763 ORTHO05D005970 8.0e-35 152.9 183 51.4
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 1.0e-34 152.5 644 30.1
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 1.0e-34 152.5 644 30.1
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 1.0e-34 152.5 179 46.9
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 3.0e-34 151.0 613 29.4
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 4.0e-34 150.6 381 35.4
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 6.8e-34 149.8 610 29.3
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.2e-33 149.1 216 43.1
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.2e-33 149.1 408 34.1
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 4.4e-33 147.1 266 38.7
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 5.7e-33 146.7 291 39.5
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 9.8e-33 146.0 165 49.1
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 1.3e-32 145.6 259 37.1
MD15G1434900 Malus domestica HOM05D005763 ORTHO05D005970 3.7e-32 144.1 132 53.0
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 3.7e-32 144.1 260 37.7
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 2.4e-31 141.4 213 44.1
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 5.4e-31 140.2 189 45.5
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 7.0e-31 139.8 143 52.4
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 2.0e-30 138.3 201 44.3
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 3.2e-28 131.0 128 53.1
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.1e-27 128.3 285 34.7
Lj9C299T2 Lonicera japonica HOM05D005763 ORTHO05D005970 1.0e-26 125.9 63 85.7
GSVIVG01023253001 Vitis vinifera HOM05D005763 ORTHO05D005970 1.4e-26 125.6 127 49.6
SMO367G0653 Selaginella moellendorffii HOM05D005763 ORTHO05D005970 8.3e-24 116.3 160 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3967 Anthoceros agrestis HOM05D005763 ORTHO05D005970 1.4e-23 115.5 182 42.3
Ca_00042_v3 Cicer arietinum L. HOM05D005763 ORTHO05D005970 1.8e-23 115.2 213 47.4
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 3.5e-22 110.9 218 34.4
arahy.Tifrunner.gnm1.ann1.BFGT2Z Arachis hypogaea HOM05D005763 ORTHO05D005970 1.4e-18 99.0 142 52.1
Mapoly0005s0143 Marchantia polymorpha HOM05D005763 ORTHO05D005970 2.9e-16 91.3 341 27.0
SalBow7G1738 Salvia bowleyana HOM05D005763 ORTHO05D005970 1.1e-15 89.4 214 40.7
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 7.0e-15 86.7 354 29.4
CBR_g8387 Chara braunii HOM05D005763 ORTHO05D005970 2.7e-14 84.7 131 36.6
Pp3c4_7890 Physcomitrium patens HOM05D000336 ORTHO05D005970 1.1e-12 79.3 373 26.5
SEGI_32531 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 8.3e-08 63.2 49 59.2
arahy.Tifrunner.gnm1.ann1.V25XF9 Arachis hypogaea HOM05D005763 ORTHO05D005970 1.9e-07 62.0 53 62.3
Lj9A299T33 Lonicera japonica HOM05D005763 ORTHO05D005970 3.2e-07 61.2 62 54.8
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 3.5e-06 57.8 62 53.2
Eucgr.D00352 Eucalyptus grandis HOM05D000336 ORTHO05D000593 7.8e-06 56.6 259 26.3


User provided reference genes

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