Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013240 Citrullus lanatus HOM05D007572 ORTHO05D009535 7.9e-73 276.9 134 100.0
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 5.4e-21 104.8 59 84.7
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 1.6e-20 103.2 59 83.1
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 7.8e-20 100.9 59 81.4
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 7.3e-18 94.4 57 73.7
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 1.2e-17 93.6 55 76.4
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 2.1e-17 92.8 53 77.4
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 2.1e-17 92.8 53 77.4
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 3.6e-17 92.0 55 74.5
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 4.7e-17 91.7 55 74.5
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 6.2e-17 91.3 55 74.5
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 8.1e-17 90.9 55 72.7
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 1.1e-16 90.5 59 72.9
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 1.1e-16 90.5 55 72.7
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 1.1e-16 90.5 55 74.5
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.4e-16 90.1 53 75.5
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 1.4e-16 90.1 53 75.5
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 1.8e-16 89.7 59 71.2
Ciclev10023453m.g Citrus clementina HOM05D007572 ORTHO05D009535 1.8e-16 89.7 60 70.0
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 1.8e-16 89.7 55 72.7
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 2.3e-16 89.4 53 77.4
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 3.1e-16 89.0 53 75.5
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 3.1e-16 89.0 53 73.6
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 3.1e-16 89.0 55 74.5
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 3.1e-16 89.0 55 72.7
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 3.1e-16 89.0 55 72.7
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 5.2e-16 88.2 53 71.7
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 2.0e-15 86.3 59 69.5
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 2.6e-15 85.9 83 49.4
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 3.4e-15 85.5 59 67.8
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 5.8e-15 84.7 55 70.9
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 1.3e-14 83.6 59 64.4
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 1.7e-14 83.2 75 54.7
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 2.2e-14 82.8 55 70.9
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 2.9e-14 82.4 83 51.8
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 2.9e-14 82.4 55 70.9
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 3.7e-14 82.0 59 66.1
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 3.7e-14 82.0 59 67.8
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 3.7e-14 82.0 55 69.1
TAR636G1955 Trochodendron aralioides HOM05D007572 ORTHO05D009535 3.7e-14 82.0 76 55.3
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 8.4e-14 80.9 59 66.1
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 1.1e-13 80.5 83 49.4
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 1.4e-13 80.1 55 67.3
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 1.4e-13 80.1 59 62.7
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 1.9e-13 79.7 59 62.7
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 1.9e-13 79.7 101 46.5
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 2.4e-13 79.3 58 62.1
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 2.4e-13 79.3 83 49.4
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 4.1e-13 78.6 55 67.3
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 4.1e-13 78.6 55 65.5
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 5.4e-13 78.2 55 67.3
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 7.1e-13 77.8 59 61.0
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 7.1e-13 77.8 83 49.4
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 9.2e-13 77.4 59 64.4
GSVIVG01028266001 Vitis vinifera HOM05D007572 ORTHO05D009535 9.2e-13 77.4 55 65.5
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 3.5e-12 75.5 59 61.0
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 3.5e-12 75.5 59 61.0
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 3.5e-12 75.5 52 65.4
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 4.6e-12 75.1 59 59.3
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 7.8e-12 74.3 55 60.0
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 1.0e-11 73.9 55 61.8
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 1.3e-11 73.6 52 63.5
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 1.3e-11 73.6 59 59.3
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 2.3e-11 72.8 52 61.5
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 3.9e-11 72.0 53 64.2
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.1e-10 70.5 55 58.2
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 5.6e-10 68.2 59 59.3
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 2.8e-09 65.9 69 50.7
Gohir.A12G120600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 4.7e-09 65.1 55 58.2
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 4.0e-08 62.0 59 54.2
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 5.2e-08 61.6 40 70.0
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 8.9e-08 60.8 64 50.0
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 2.0e-07 59.7 60 48.3
Os07g0637100 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 2.6e-07 59.3 52 53.8
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 2.2e-06 56.2 34 70.6
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 4.9e-06 55.1 37 62.2
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 6.4e-06 54.7 33 72.7
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 6.4e-06 54.7 34 67.6


User provided reference genes

Program Settings