Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 0.0e+00 2073.5 1041 100.0
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 0.0e+00 1714.1 1042 83.6
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 0.0e+00 1345.5 1019 70.1
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 0.0e+00 1136.3 826 73.1
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 2.3e-175 620.5 1087 38.8
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 8.1e-173 612.1 1090 38.4
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 7.8e-168 595.5 1088 38.8
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 1.2e-163 581.6 1041 39.7
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 1.5e-163 581.3 1124 36.7
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 1.9e-158 564.3 1084 36.3
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 6.7e-151 539.3 1136 36.5
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 6.2e-149 532.7 1080 35.3
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 9.0e-148 528.9 1070 36.2
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 3.8e-146 523.5 1081 35.6
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 4.2e-145 520.0 1101 35.7
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 2.3e-143 514.2 1096 35.9
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 3.9e-143 513.5 1083 35.0
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 4.3e-142 510.0 1087 34.3
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 4.3e-142 510.0 1103 34.5
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 2.1e-141 507.7 1087 34.3
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 3.1e-140 503.8 1088 34.2
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 1.3e-135 488.4 1089 35.2
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.6e-133 481.5 1099 33.2
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 3.1e-132 477.2 1172 34.1
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 5.0e-130 469.9 1081 33.7
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 8.5e-130 469.2 1123 33.6
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.9e-129 468.0 1146 33.9
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 6.1e-128 463.0 1088 33.1
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 4.3e-126 456.8 1127 34.1
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 9.7e-126 455.7 997 35.0
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 3.7e-125 453.8 1097 34.1
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 3.8e-122 443.7 1126 31.5
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 3.8e-122 443.7 1267 30.7
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 5.2e-119 433.3 875 36.7
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.5e-118 431.8 1090 33.5
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 4.4e-118 430.3 1139 33.1
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 1.4e-116 425.2 1202 31.8
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 1.6e-115 421.8 1029 33.7
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 2.9e-114 417.5 1137 32.0
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 3.8e-114 417.2 871 35.9
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 6.5e-114 416.4 924 34.5
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 3.2e-113 414.1 1190 30.9
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 2.1e-112 411.4 1120 32.2
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.7e-112 411.0 1088 32.7
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.4e-111 408.7 1052 33.6
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 4.1e-108 397.1 999 33.3
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 7.0e-108 396.4 1007 33.8
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 4.5e-107 393.7 1093 31.8
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 5.9e-107 393.3 1091 32.4
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 3.0e-103 380.9 1055 31.8
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 5.2e-103 380.2 1077 31.2
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 1.1e-100 372.5 1141 29.5
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 1.7e-98 365.2 1053 31.7
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 2.5e-97 361.3 997 31.7
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 1.2e-96 359.0 1094 28.9
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 2.1e-96 358.2 1115 30.1
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 3.0e-95 354.4 898 32.5
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 9.8e-94 349.4 1044 31.2
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 1.7e-93 348.6 1131 29.4
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 6.3e-93 346.7 1150 29.4
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 3.2e-84 317.8 1045 28.6
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 4.7e-80 303.9 912 30.8
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 2.9e-77 294.7 978 29.0
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 5.4e-76 290.4 867 31.9
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 2.7e-75 288.1 582 35.7
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 6.6e-74 283.5 870 30.3
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 1.9e-73 282.0 953 30.0
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 1.2e-72 279.3 1052 28.0
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 2.0e-70 271.9 339 43.7
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 7.5e-70 270.0 312 47.8
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 5.1e-66 257.3 1004 28.4
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 3.4e-62 244.6 575 33.0
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 2.4e-60 238.4 988 27.3
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 7.3e-57 226.9 1009 27.7
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 4.0e-55 221.1 227 47.6
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 6.0e-51 207.2 604 29.8
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.3e-48 199.5 158 62.0
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 2.1e-48 198.7 850 27.3
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 6.2e-48 197.2 846 27.3
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 3.1e-39 168.3 712 27.9
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 2.0e-38 165.6 604 28.3
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 6.4e-37 160.6 154 50.6
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 1.8e-34 152.5 466 32.4
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 4.8e-32 144.4 131 54.2
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 2.1e-19 102.4 73 64.4
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 3.0e-18 98.6 78 60.3
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 3.1e-15 88.6 64 62.5
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 8.5e-13 80.5 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 3.2e-12 78.6 150 27.3
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 6.1e-11 74.3 105 43.8
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 6.1e-11 74.3 77 53.2
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 3.0e-10 72.0 73 45.2
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-10 70.5 106 33.0
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 6.3e-08 64.3 60 46.7
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 2.6e-06 58.9 148 30.4


User provided reference genes

Program Settings