Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 4.8e-184 647.9 377 100.0
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 5.7e-169 597.8 405 87.7
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.1e-167 593.6 405 86.9
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 8.3e-160 567.4 418 82.5
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.3e-149 533.5 416 73.3
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 4.7e-123 445.3 404 59.2
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.6e-121 439.5 404 59.2
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.7e-120 436.8 397 58.7
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 8.4e-120 434.5 371 62.8
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.1e-119 434.1 407 59.0
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 1.9e-119 433.3 398 59.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.4e-119 433.0 402 59.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 3.2e-119 432.6 396 68.9
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.4e-119 431.8 403 58.6
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.4e-119 431.8 403 58.6
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 7.1e-119 431.4 397 58.9
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 1.2e-118 430.6 397 59.2
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 1.6e-118 430.3 399 59.9
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.5e-118 429.1 403 58.3
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 3.5e-118 429.1 397 59.2
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.6e-118 428.7 395 59.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.6e-118 428.7 377 59.2
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 6.0e-118 428.3 449 54.3
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.7e-117 426.8 403 57.8
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 2.3e-117 426.4 403 57.8
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 3.0e-117 426.0 403 56.8
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.0e-117 426.0 401 59.1
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 3.9e-117 425.6 406 57.9
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 4.3e-116 422.2 397 57.2
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 5.6e-116 421.8 418 56.0
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 3.6e-115 419.1 397 58.4
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.8e-115 418.7 397 59.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 1.1e-114 417.5 324 67.0
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.4e-114 417.2 397 58.2
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.8e-114 416.8 367 60.8
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.8e-114 416.8 403 56.3
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 2.4e-114 416.4 397 57.4
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 4.0e-114 415.6 461 52.7
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 6.9e-114 414.8 373 60.9
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 9.0e-114 414.5 367 70.0
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.2e-113 414.1 300 69.7
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.6e-113 412.9 370 68.1
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 2.6e-113 412.9 369 71.5
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.4e-113 412.5 371 67.9
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 4.4e-113 412.1 375 71.2
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 4.4e-113 412.1 388 58.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 5.8e-113 411.8 447 53.9
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 7.6e-113 411.4 367 69.8
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 9.9e-113 411.0 370 67.3
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.7e-112 410.2 398 56.5
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.9e-112 409.5 377 57.6
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 3.8e-112 409.1 398 56.8
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 4.9e-112 408.7 373 59.8
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 4.9e-112 408.7 404 58.7
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 4.9e-112 408.7 415 63.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 6.4e-112 408.3 371 67.7
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 6.4e-112 408.3 407 63.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.4e-112 408.3 396 55.1
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.9e-111 406.8 377 69.8
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 9.3e-111 404.4 354 65.3
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 9.3e-111 404.4 354 65.3
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 1.2e-110 404.1 403 56.8
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 6.0e-110 401.7 403 56.6
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 7.9e-110 401.4 411 54.3
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 3.9e-109 399.1 292 69.2
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.1e-108 397.5 355 60.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 1.1e-108 397.5 345 60.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.1e-108 397.5 439 51.5
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.5e-108 397.1 365 57.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 5.6e-108 395.2 480 52.5
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 5.6e-108 395.2 396 54.3
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.6e-107 393.7 323 62.8
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.8e-107 392.9 355 59.4
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.8e-107 392.9 414 64.0
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 4.8e-107 392.1 405 57.8
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 3.1e-106 389.4 404 53.2
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.3e-104 384.0 309 64.7
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.3e-104 384.0 334 61.1
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.7e-104 383.6 304 67.8
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.4e-104 381.7 381 56.4
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-103 380.9 311 63.7
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.4e-103 380.6 304 64.1
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 2.4e-103 379.8 367 56.7
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.3e-101 373.2 281 68.7
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 6.7e-101 371.7 300 65.0
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.5e-100 370.5 300 64.7
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.3e-100 369.0 382 55.5
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 5.6e-100 368.6 415 51.8
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 6.9e-98 361.7 325 60.3
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.8e-97 358.6 287 64.8
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 2.1e-94 350.1 367 55.0
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.1e-94 350.1 271 66.4
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.3e-93 346.7 276 65.2
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 6.7e-93 345.1 355 53.5
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 8.7e-93 344.7 327 58.1
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 5.7e-92 342.0 276 61.6
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 9.6e-92 341.3 283 60.4
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 4.8e-91 339.0 251 68.5
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 4.8e-91 339.0 251 68.5
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 9.0e-90 334.7 319 57.4
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.0e-89 333.6 291 61.2
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.6e-89 333.2 291 60.8
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.6e-89 333.2 291 60.8
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 4.5e-89 332.4 291 60.8
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-89 332.4 291 60.8
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.3e-88 330.9 372 50.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.9e-88 329.7 291 60.5
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 5.0e-88 328.9 330 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 6.7e-85 318.5 326 52.1
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.8e-82 310.5 279 59.5
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.9e-78 295.0 272 59.2
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 8.8e-77 291.6 252 59.9
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.1e-76 291.2 287 51.9
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.1e-66 256.1 253 54.9
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.2e-64 250.4 185 66.5
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.0e-61 241.5 253 52.6
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 8.2e-59 231.9 283 50.5
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.3e-53 213.8 150 68.7
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.0e-52 210.7 376 37.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 2.4e-42 177.2 184 53.3
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.3e-40 170.6 138 59.4
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.2e-35 154.1 147 59.9
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.6e-33 147.9 112 67.9
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.1e-30 137.5 144 53.5
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.1e-29 133.7 124 60.5
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 2.2e-27 127.5 98 68.4
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 7.0e-26 122.5 80 72.5
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 8.6e-16 89.0 72 65.3
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 7.6e-12 75.9 348 22.1
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.0e-09 66.2 50 66.0
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.3e-07 60.1 146 34.2


User provided reference genes

Program Settings