Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.9e-83 311.6 180 100.0
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 3.8e-78 295.0 182 94.5
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 7.4e-74 280.8 182 89.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 8.2e-65 250.8 181 81.2
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 5.7e-50 201.4 180 73.9
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 5.0e-30 135.2 176 50.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 4.2e-29 132.1 123 57.7
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 9.5e-29 131.0 176 45.5
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 3.6e-28 129.0 178 45.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 6.1e-28 128.3 78 74.4
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 6.1e-28 128.3 122 59.8
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.4e-27 127.1 81 71.6
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.4e-27 127.1 114 55.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.8e-27 126.7 169 46.2
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 3.0e-27 125.9 84 71.4
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.0e-27 125.9 122 54.1
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 4.0e-27 125.6 144 48.6
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 4.0e-27 125.6 144 48.6
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 4.0e-27 125.6 78 73.1
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 4.0e-27 125.6 78 73.1
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.2e-27 125.2 179 42.5
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 6.8e-27 124.8 177 44.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 6.8e-27 124.8 81 72.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 6.8e-27 124.8 76 75.0
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 8.8e-27 124.4 81 69.1
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 8.8e-27 124.4 81 69.1
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 8.8e-27 124.4 80 73.8
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 8.8e-27 124.4 84 65.5
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.5e-26 123.6 81 69.1
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 2.0e-26 123.2 81 70.4
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 2.0e-26 123.2 85 67.1
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.0e-26 123.2 181 54.1
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.6e-26 122.9 180 43.3
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.6e-26 122.9 83 66.3
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.6e-26 122.9 82 69.5
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 3.4e-26 122.5 80 68.8
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-26 122.5 188 43.6
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-26 122.5 188 43.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.4e-26 122.5 84 64.3
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.4e-26 122.5 84 64.3
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 3.4e-26 122.5 82 72.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 5.7e-26 121.7 176 44.3
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 7.5e-26 121.3 171 46.8
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 7.5e-26 121.3 79 69.6
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 7.5e-26 121.3 85 67.1
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 7.5e-26 121.3 180 45.6
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 7.5e-26 121.3 123 53.7
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.5e-26 121.3 77 70.1
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.3e-25 120.6 78 69.2
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.3e-25 120.6 80 72.5
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.3e-25 120.6 82 69.5
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.3e-25 120.6 82 67.1
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.7e-25 120.2 72 75.0
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.2e-25 119.8 156 46.2
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.8e-25 119.4 83 65.1
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 3.7e-25 119.0 183 42.1
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 4.9e-25 118.6 80 66.2
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 6.3e-25 118.2 168 43.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 6.3e-25 118.2 113 58.4
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 6.3e-25 118.2 122 50.0
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 8.3e-25 117.9 166 44.0
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 8.3e-25 117.9 83 66.3
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 8.3e-25 117.9 174 47.1
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.4e-24 117.1 176 45.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.4e-24 117.1 85 64.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.8e-24 116.7 177 41.2
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.8e-24 116.7 122 54.9
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 3.1e-24 115.9 77 67.5
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.1e-24 115.9 85 64.7
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 5.4e-24 115.2 160 49.4
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 9.2e-24 114.4 167 49.1
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.2e-23 114.0 179 45.3
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.2e-23 114.0 154 42.2
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.6e-23 113.6 80 67.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 2.0e-23 113.2 160 38.8
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.7e-23 112.8 157 49.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.5e-23 112.5 72 70.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.5e-23 112.1 182 39.6
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.5e-23 112.1 83 63.9
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 5.9e-23 111.7 83 60.2
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.3e-22 109.8 182 47.8
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 3.8e-22 109.0 171 41.5
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.8e-22 109.0 85 57.6
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 5.0e-22 108.6 82 61.0
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 5.0e-22 108.6 122 52.5
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 5.0e-22 108.6 122 48.4
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 6.6e-22 108.2 76 69.7
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 6.6e-22 108.2 79 60.8
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 8.6e-22 107.8 82 63.4
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 8.6e-22 107.8 86 62.8
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 1.1e-21 107.5 83 57.8
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.5e-21 107.1 89 65.2
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 1.5e-21 107.1 86 62.8
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.5e-21 107.1 86 62.8
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.9e-21 106.7 86 60.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.9e-21 106.7 177 39.5
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 3.3e-21 105.9 113 53.1
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 3.3e-21 105.9 80 58.8
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 4.3e-21 105.5 162 40.7
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 4.3e-21 105.5 86 55.8
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 84 56.0
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.2e-20 104.0 80 61.2
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.8e-20 102.8 79 63.3
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.8e-20 102.8 86 60.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 3.6e-20 102.4 85 61.2
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.6e-20 102.4 84 60.7
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 6.1e-20 101.7 77 63.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.1e-20 101.7 68 66.2
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 6.1e-20 101.7 168 41.1
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.0e-19 100.9 84 58.3
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.4e-19 100.5 84 56.0
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.4e-19 100.5 122 47.5
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.3e-19 99.8 163 42.3
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.0e-19 99.0 66 65.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.0e-19 99.0 66 65.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.2e-19 98.6 82 53.7
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 5.2e-19 98.6 113 51.3
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 6.8e-19 98.2 83 59.0
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.9e-19 97.8 80 56.2
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 8.9e-19 97.8 136 41.9
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 8.9e-19 97.8 86 60.5
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 8.9e-19 97.8 79 63.3
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 1.5e-18 97.1 71 63.4
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-18 96.7 72 61.1
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 5.7e-18 95.1 135 41.5
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.4e-16 90.5 76 53.9
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.4e-16 90.5 77 51.9
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 3.2e-16 89.4 135 40.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 3.2e-16 89.4 79 55.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.2e-16 89.4 82 54.9
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 7.0e-16 88.2 74 60.8
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 7.0e-16 88.2 74 60.8
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.2e-15 87.4 79 55.7
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.7e-15 86.3 79 54.4
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 5.9e-15 85.1 86 51.2
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.1e-13 80.9 77 55.8
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.5e-13 80.5 68 57.4
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 4.3e-13 79.0 62 59.7
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.3e-13 78.2 82 50.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 7.3e-13 78.2 82 50.0
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.6e-12 77.0 75 50.7
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.8e-11 73.6 73 47.9
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 6.0e-07 58.5 80 43.8
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.7e-06 57.0 80 41.2


User provided reference genes

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