Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 7.4e-66 253.8 137 100.0
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.1e-40 168.3 138 68.8
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.2e-38 162.5 135 68.1
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.3e-30 136.7 135 61.5
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-21 106.7 136 49.3
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.8e-19 97.4 137 47.4
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.6e-18 95.9 145 44.1
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 7.5e-18 94.4 142 45.8
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 2.4e-16 89.4 137 44.5
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 3.1e-16 89.0 150 43.3
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 9.1e-16 87.4 148 41.2
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 9.1e-16 87.4 147 44.2
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 2.0e-15 86.3 140 39.3
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.7e-15 85.9 143 47.6
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 4.5e-15 85.1 135 45.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 5.9e-15 84.7 140 42.9
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.9e-15 84.7 142 40.8
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 7.7e-15 84.3 147 40.1
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 7.7e-15 84.3 139 43.9
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 7.7e-15 84.3 138 44.9
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.3e-14 83.6 133 45.1
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.7e-14 83.2 148 44.6
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.7e-14 83.2 142 44.4
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.2e-14 82.8 141 41.8
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.9e-14 82.4 136 42.6
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.8e-14 82.0 141 46.1
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.8e-14 82.0 139 44.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.8e-14 82.0 144 45.1
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 6.5e-14 81.3 134 41.8
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 6.5e-14 81.3 136 41.9
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 6.5e-14 81.3 149 42.3
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.5e-14 80.9 133 39.8
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-13 80.5 141 42.6
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-13 80.1 133 38.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.5e-13 80.1 133 39.1
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.5e-13 80.1 141 41.8
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.9e-13 79.7 136 41.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.5e-13 79.3 138 42.8
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.5e-13 79.3 144 39.6
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.5e-13 79.3 139 41.0
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-13 79.0 133 39.1
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 4.2e-13 78.6 133 39.1
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 4.2e-13 78.6 133 39.1
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 4.2e-13 78.6 133 39.1
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 4.2e-13 78.6 133 39.1
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 5.5e-13 78.2 137 37.2
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 5.5e-13 78.2 133 38.3
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 5.5e-13 78.2 132 41.7
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 5.5e-13 78.2 133 38.3
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 5.5e-13 78.2 134 41.0
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 7.2e-13 77.8 133 38.3
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 7.2e-13 77.8 133 38.3
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 7.2e-13 77.8 132 41.7
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 7.2e-13 77.8 132 41.7
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 7.2e-13 77.8 147 40.8
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 7.2e-13 77.8 140 41.4
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 9.4e-13 77.4 138 40.6
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-12 77.0 133 37.6
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-12 77.0 132 41.7
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.2e-12 77.0 133 37.6
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.2e-12 77.0 132 41.7
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.2e-12 77.0 143 39.9
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.6e-12 76.6 133 37.6
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 2.1e-12 76.3 140 39.3
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-12 75.9 139 44.6
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.6e-12 75.5 132 37.9
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 3.6e-12 75.5 138 42.0
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.1e-12 74.7 132 40.2
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.1e-12 74.7 133 42.1
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 6.1e-12 74.7 141 39.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 8.0e-12 74.3 133 41.4
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.0e-11 73.9 138 38.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-11 73.6 141 41.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.4e-11 73.6 138 38.4
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-11 73.6 143 38.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-11 73.6 143 38.5
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.4e-11 73.6 140 40.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.8e-11 73.2 133 39.1
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.8e-11 73.2 157 38.9
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-11 73.2 149 39.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.0e-11 72.4 142 38.7
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.0e-11 72.4 146 37.0
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.0e-11 72.0 142 38.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 5.2e-11 71.6 149 37.6
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.8e-11 71.2 148 37.2
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.8e-11 70.9 132 38.6
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 8.8e-11 70.9 131 41.2
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.2e-10 70.5 139 37.4
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.0e-10 69.7 133 38.3
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.0e-10 69.7 133 38.3
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 2.6e-10 69.3 146 38.4
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.6e-10 69.3 138 37.7
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.4e-10 68.9 129 40.3
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 4.4e-10 68.6 129 38.8
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.4e-10 68.6 131 38.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 5.7e-10 68.2 139 39.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 5.7e-10 68.2 142 38.0
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 5.7e-10 68.2 129 35.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.7e-10 68.2 133 36.8
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 7.5e-10 67.8 150 38.7
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 7.5e-10 67.8 143 36.4
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 9.8e-10 67.4 144 37.5
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 9.8e-10 67.4 142 36.6
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.3e-09 67.0 132 37.1
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.3e-09 67.0 132 40.2
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.3e-09 67.0 153 34.0
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 1.3e-09 67.0 52 53.8
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.7e-09 66.6 150 36.7
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.7e-09 66.6 149 38.3
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.7e-09 66.6 144 38.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.7e-09 66.6 140 36.4
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.7e-09 66.6 140 37.9
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 2.2e-09 66.2 149 36.9
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.8e-09 65.9 143 37.1
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.8e-09 65.9 147 36.1
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 3.7e-09 65.5 136 40.4
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.8e-09 65.1 153 35.9
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 4.8e-09 65.1 131 40.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 8.3e-09 64.3 142 37.3
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 8.3e-09 64.3 148 35.1
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.1e-08 63.9 164 34.1
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-08 63.5 143 41.3
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.4e-08 63.5 144 35.4
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 3.1e-08 62.4 133 39.8
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 4.1e-08 62.0 140 37.1
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 5.4e-08 61.6 137 37.2
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 9.1e-08 60.8 151 32.5
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.7e-07 59.3 140 37.1
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.7e-07 59.3 149 34.9
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.9e-07 58.2 137 36.5
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.0e-06 57.4 51 62.7
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 2.3e-06 56.2 48 60.4
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.8e-06 55.5 132 35.6
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 3.8e-06 55.5 145 38.6
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 6.6e-06 54.7 71 50.7


User provided reference genes

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