Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 3.4e-165 585.1 330 100.0
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 2.7e-146 522.3 331 89.1
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 3.5e-146 521.9 340 86.2
Sed0013089 Sechium edule HOM05D000001 ORTHO05D009942 1.4e-81 307.4 284 64.4
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 1.3e-71 274.2 292 52.1
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 2.8e-71 273.1 303 48.2
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 3.7e-71 272.7 297 49.2
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.1e-70 271.2 303 47.9
Cfa013541 Carpinus fangiana HOM05D000001 ORTHO05D009942 3.1e-70 269.6 288 53.5
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 5.9e-69 265.4 285 54.4
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 1.7e-68 263.8 298 47.3
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 2.9e-68 263.1 292 49.0
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 5.0e-68 262.3 297 47.8
CiPaw.07G187100 Carya illinoinensis HOM05D000001 ORTHO05D009942 2.5e-67 260.0 290 52.1
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 5.5e-67 258.8 282 52.1
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 2.5e-59 233.4 295 48.5
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 6.8e-57 225.3 300 47.3
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 2.6e-56 223.4 274 46.0
PGR004G0094 Punica granatum HOM05D000001 ORTHO05D009942 4.8e-55 219.2 284 45.4
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 1.2e-53 214.5 298 46.0
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 2.2e-52 210.3 296 45.9
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 1.1e-51 208.0 298 45.3
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 1.6e-50 204.1 294 43.2
Cpa.g.sc75.11 Carica papaya HOM05D000001 ORTHO05D009942 4.7e-50 202.6 288 43.1
Lalb_Chr07g0180131 Lupinus albus HOM05D000001 ORTHO05D009942 8.0e-50 201.8 298 44.0
Ciclev10008915m.g Citrus clementina HOM05D000001 ORTHO05D009942 2.3e-49 200.3 330 42.7
Thecc.09G162400 Theobroma cacao HOM05D000001 ORTHO05D009942 5.7e-48 195.7 296 42.6
VMungo1215G0291 Vigna mungo HOM05D000001 ORTHO05D009942 1.3e-47 194.5 298 44.0
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 2.2e-47 193.7 297 40.4
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 2.8e-47 193.4 281 42.3
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 4.9e-47 192.6 287 43.2
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 8.3e-47 191.8 281 41.6
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 8.3e-47 191.8 281 41.6
Psat6g238680 Pisum sativum HOM05D000001 ORTHO05D009942 1.4e-46 191.0 294 41.8
THA.LOC104811819 Tarenaya hassleriana HOM05D000001 ORTHO05D009942 1.8e-46 190.7 298 40.9
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 3.1e-46 189.9 281 40.9
Duzib168G2157 Durio zibethinus HOM05D000001 ORTHO05D009942 5.4e-46 189.1 288 43.4
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 9.1e-46 188.3 272 41.9
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 3.5e-45 186.4 291 38.8
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 4.5e-45 186.0 282 41.5
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 7.7e-45 185.3 293 40.3
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 2.3e-44 183.7 281 39.9
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 3.8e-44 183.0 281 40.6
Medtr1g116000 Medicago truncatula HOM05D000001 ORTHO05D009942 3.8e-44 183.0 281 41.3
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 1.1e-43 181.4 281 40.2
Duzib187G0438 Durio zibethinus HOM05D000001 ORTHO05D009942 1.5e-43 181.0 316 39.6
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 1.9e-43 180.6 301 40.2
Gohir.A05G006700 Gossypium hirsutum HOM05D000001 ORTHO05D009942 5.5e-43 179.1 295 40.0
Glyma.14G069900 Glycine max HOM05D000001 ORTHO05D009942 7.2e-43 178.7 293 42.7
Gorai.009G007700 Gossypium raimondii HOM05D000001 ORTHO05D009942 1.2e-42 177.9 290 40.3
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 2.1e-42 177.2 289 38.8
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 2.1e-42 177.2 309 39.8
Gohir.D05G007600 Gossypium hirsutum HOM05D000001 ORTHO05D009942 2.8e-42 176.8 290 40.0
Sabra18G0084600 Salix brachista HOM05D000001 ORTHO05D009942 8.0e-42 175.3 269 41.6
arahy.Tifrunner.gnm1.ann1.HQFS40 Arachis hypogaea HOM05D000001 ORTHO05D009942 4.4e-40 169.5 283 41.3
Nn2g12578 Nelumbo nucifera HOM05D000001 ORTHO05D009942 2.7e-37 160.2 283 39.2
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 3.5e-37 159.8 285 37.2
Psat0s236g0120 Pisum sativum HOM05D000001 ORTHO05D009942 6.6e-36 155.6 232 44.8
Solyc07g006410.1 Solanum lycopersicum HOM05D000001 ORTHO05D009942 6.6e-36 155.6 299 36.5
Phvul.001G010200 Phaseolus vulgaris HOM05D000001 ORTHO05D009942 1.5e-35 154.5 300 37.3
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.5e-35 153.7 210 46.7
CAN.G584.60 Capsicum annuum HOM05D000001 ORTHO05D009942 8.3e-31 138.7 293 33.8
Aqoxy7G03211 Aquilegia oxysepala HOM05D000001 ORTHO05D009942 1.9e-30 137.5 289 35.6
VMungo0647G1251 Vigna mungo HOM05D000001 ORTHO05D009942 3.5e-29 133.3 268 37.3
Ah.14g084030 Amaranthus hybridus HOM05D000001 ORTHO05D009942 1.7e-28 131.0 299 35.1
TAR625G0513 Trochodendron aralioides HOM05D000001 ORTHO05D009942 5.0e-28 129.4 147 47.6
TPR.G10425 Trifolium pratense HOM05D000001 ORTHO05D009942 2.1e-26 124.0 298 34.9
Nn2g12580 Nelumbo nucifera HOM05D000001 ORTHO05D009942 6.2e-26 122.5 212 36.8
AUR62039972 Chenopodium quinoa HOM05D000001 ORTHO05D009942 2.6e-24 117.1 298 32.2
Sc08g0005400 Simmondsia chinensis HOM05D000001 ORTHO05D009942 2.2e-23 114.0 204 38.7
Ca_11326_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.9e-23 113.6 145 46.2
CARHR223490 Cardamine hirsuta HOM05D000001 ORTHO05D009942 2.4e-22 110.5 169 39.6
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 2.1e-21 107.5 288 30.9
Peaxi162Scf00457g00043 Petunia axillaris HOM05D000001 ORTHO05D009942 7.8e-21 105.5 165 37.6
Ca_11327_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 3.0e-20 103.6 146 43.8
Sopen07g002510 Solanum pennellii HOM05D000001 ORTHO05D009942 1.5e-16 91.3 166 36.1
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 4.4e-16 89.7 294 30.6
Nitab4.5_0004017g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009942 7.6e-16 89.0 162 34.0
TWI32G0375 Tripterygium wilfordii HOM05D000001 ORTHO05D009942 7.6e-16 89.0 121 40.5
PGSC0003DMG400027446 Solanum tuberosum HOM05D000001 ORTHO05D009942 1.3e-15 88.2 160 36.9
Ciclev10006798m.g Citrus clementina HOM05D000001 ORTHO05D009942 1.9e-14 84.3 157 38.2
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.5e-11 74.7 301 26.2
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.5e-11 73.9 291 27.1
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-10 71.6 293 29.4
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-09 68.6 292 28.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-09 66.6 293 27.0
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 5.2e-09 66.2 286 25.9
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 8.9e-09 65.5 293 25.9
COL.COLO4_16055 Corchorus olitorius HOM05D000001 ORTHO05D009942 2.6e-08 63.9 126 34.1
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.8e-08 62.8 307 25.4
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 9.9e-08 62.0 286 26.6
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 1.3e-07 61.6 291 29.6
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.2e-07 60.8 303 22.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.8e-07 60.1 292 26.7
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.4e-07 59.3 301 24.3
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.1e-06 58.5 288 27.8
Gohir.D03G061900 Gossypium hirsutum HOM05D001062 ORTHO05D000884 1.1e-06 58.5 310 24.2
THA.LOC104812705 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 1.4e-06 58.2 310 22.9
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.9e-06 57.8 289 27.7
Medtr4g096890 Medicago truncatula HOM05D001062 ORTHO05D000884 2.4e-06 57.4 312 25.3
Cfa002901 Carpinus fangiana HOM05D001062 ORTHO05D000884 3.2e-06 57.0 311 28.9
Haze_25253 Corylus avellana HOM05D001062 ORTHO05D000884 3.2e-06 57.0 309 28.2
Gorai.013G106700 Gossypium raimondii HOM05D001062 ORTHO05D000884 3.2e-06 57.0 312 24.7
Cfa002899 Carpinus fangiana HOM05D001062 ORTHO05D000884 4.2e-06 56.6 314 26.8
Duzib041G0457 Durio zibethinus HOM05D001062 ORTHO05D000884 4.2e-06 56.6 307 23.8
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.4e-06 56.2 298 27.5
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.4e-06 56.2 298 27.5
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.1e-06 55.8 291 25.1
QL11p013748 Quercus lobata HOM05D001062 ORTHO05D000884 7.1e-06 55.8 315 23.8
SGA_v2.0_scaffold244G44337 Striga asiatica HOM05D001062 ORTHO05D000884 7.1e-06 55.8 316 26.3
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 9.3e-06 55.5 300 26.3


User provided reference genes

Program Settings