Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 0.0e+00 1439.1 1080 100.0
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 0.0e+00 1212.2 1077 85.2
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 0.0e+00 1182.5 1078 88.1
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 0.0e+00 1090.9 1077 82.6
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.3e-194 684.5 1097 64.6
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.3e-178 631.3 1085 61.8
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.7e-178 630.9 1085 61.8
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 1.9e-177 627.5 1078 62.6
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 3.2e-172 610.1 1071 63.6
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 3.9e-170 603.2 1074 60.1
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 7.4e-169 599.0 747 58.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 2.0e-166 590.9 1085 59.7
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 7.6e-166 589.0 1015 63.2
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 9.9e-166 588.6 1085 60.9
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 6.4e-165 585.9 1016 63.0
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.3e-162 577.4 974 62.4
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 8.7e-162 575.5 754 57.6
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.1e-161 575.1 999 64.2
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.4e-159 567.4 1070 60.0
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.1e-159 567.0 1070 60.3
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 2.7e-155 553.9 1034 60.7
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 6.0e-155 552.7 1067 59.8
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 2.1e-152 544.3 1074 60.1
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.1e-151 540.4 1070 59.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 9.0e-151 538.9 1075 58.6
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 6.5e-149 532.7 1059 57.9
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 5.3e-143 513.1 748 54.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.0e-142 511.1 1076 54.2
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 2.6e-142 510.8 1059 56.5
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 2.1e-139 501.1 1075 54.0
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 3.6e-139 500.4 1056 56.6
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 1.8e-138 498.0 1077 46.0
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 3.3e-137 493.8 1064 58.9
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.4e-135 488.4 738 54.1
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.2e-131 475.3 726 51.8
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 3.6e-131 473.8 1055 56.4
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 7.9e-131 472.6 992 60.3
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.0e-130 472.2 1095 56.4
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.3e-130 471.1 1061 55.9
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.7e-129 466.5 746 52.4
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 2.4e-127 461.1 1079 55.7
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.6e-123 448.4 1064 48.0
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 3.0e-122 444.1 722 53.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 4.5e-118 430.3 910 61.0
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 4.2e-116 423.7 1067 56.6
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 8.0e-115 419.5 1072 53.7
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.3e-112 412.1 1065 57.2
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 4.1e-111 407.1 728 48.9
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.5e-110 404.1 729 50.2
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 5.9e-110 403.3 744 50.1
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.2e-107 395.6 739 48.0
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 2.1e-107 394.8 645 55.5
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 2.8e-107 394.4 1058 52.9
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 8.8e-106 389.4 729 48.8
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 1.7e-104 385.2 584 55.8
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.7e-104 384.0 744 49.3
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 4.9e-104 383.6 1051 56.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 4.1e-103 380.6 730 48.2
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 7.0e-103 379.8 1063 54.6
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.2e-102 379.0 729 48.0
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.0e-102 378.3 1073 53.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 4.5e-102 377.1 730 49.0
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 1.9e-100 371.7 726 47.8
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 1.6e-99 368.6 1057 55.5
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.6e-97 361.3 642 43.9
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 9.2e-95 352.8 1097 53.2
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 1.4e-90 339.0 908 55.4
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 2.0e-89 335.1 642 52.2
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 2.0e-89 335.1 642 52.2
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 6.4e-88 330.1 639 51.5
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 1.1e-87 329.3 425 69.6
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 4.6e-86 323.9 925 57.4
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.5e-84 318.9 1011 37.8
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.5e-84 318.2 742 46.4
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 2.0e-81 308.5 735 45.4
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 1.7e-77 295.4 538 51.7
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 3.3e-76 291.2 673 54.2
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.8e-75 288.1 463 54.4
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 1.5e-73 282.3 729 46.1
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 2.6e-73 281.6 672 51.6
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 2.2e-72 278.5 726 45.2
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.8e-70 270.0 730 45.9
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 4.0e-66 257.7 1067 40.4
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 9.9e-65 253.1 471 58.2
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 2.9e-56 224.9 385 52.2
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 4.6e-54 217.6 262 47.7
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 5.3e-50 204.1 340 33.8
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 8.7e-45 186.8 343 33.8
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 6.2e-43 180.6 730 40.1
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 5.8e-41 174.1 587 44.6
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.1e-38 165.6 579 42.5
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 1.4e-31 142.9 241 36.1
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.4e-28 130.6 668 39.2
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 4.5e-25 121.3 208 35.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 1.4e-23 116.3 153 39.2
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 2.7e-22 112.1 235 30.6
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 9.7e-20 103.6 153 37.3
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 4.8e-19 101.3 478 60.9
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 1.2e-17 96.7 144 35.4
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 2.6e-17 95.5 149 38.3
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 1.9e-15 89.4 104 38.5
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.6e-14 86.3 149 36.9
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.6e-14 86.3 149 36.9
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 5.2e-13 81.3 149 36.2
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 8.8e-13 80.5 149 34.2
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 2.8e-11 75.5 144 33.3
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.1e-10 73.6 170 27.6
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 2.6e-09 68.9 124 33.1
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 7.7e-09 67.4 221 26.2
COL.COLO4_34979 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.8e-08 65.1 194 29.4
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 6.5e-08 64.3 128 28.9
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 8.5e-08 63.9 143 27.3
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.1e-07 63.5 235 24.7
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 1.9e-07 62.8 233 23.6
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 1.9e-07 62.8 107 36.4
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 2.5e-07 62.4 114 30.7
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 3.2e-07 62.0 212 25.0
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 3.2e-07 62.0 114 30.7
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 4.2e-07 61.6 199 24.1
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 4.2e-07 61.6 232 24.1
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 4.2e-07 61.6 213 28.6
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 5.5e-07 61.2 234 24.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 5.5e-07 61.2 227 23.3
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 7.2e-07 60.8 189 25.4
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 9.4e-07 60.5 183 24.6
FAN13G0647 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.2e-06 60.1 129 34.1
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 1.2e-06 60.1 263 22.4
Manes.18G087600 Manihot esculenta HOM05D000001 ORTHO05D000003 1.2e-06 60.1 107 30.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 1.6e-06 59.7 247 21.9
COL.COLO4_24378 Corchorus olitorius HOM05D007128 ORTHO05D009059 1.6e-06 59.7 140 30.7
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 1.6e-06 59.7 208 24.0
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 1.6e-06 59.7 124 29.0
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.1e-06 59.3 164 25.6
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.1e-06 59.3 218 22.9
AagrBONN_evm.TU.Sc2ySwM_117.3797 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.9 257 24.1
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 2.7e-06 58.9 163 27.0
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.7e-06 58.9 131 26.7
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 3.6e-06 58.5 226 25.7
Ah.07g205900 Amaranthus hybridus HOM05D000001 ORTHO05D000003 3.6e-06 58.5 213 20.7
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 3.6e-06 58.5 157 27.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 3.6e-06 58.5 160 25.0
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 3.6e-06 58.5 228 22.4
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.6e-06 58.5 116 31.0
Lsat_1_v5_gn_9_36040 Lactuca sativa HOM05D007172 ORTHO05D009267 3.6e-06 58.5 111 32.4
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 4.7e-06 58.2 166 30.1
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 4.7e-06 58.2 166 30.1
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 4.7e-06 58.2 230 24.3
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 4.7e-06 58.2 131 26.7
Thecc.10G126300 Theobroma cacao HOM05D007173 ORTHO05D009151 4.7e-06 58.2 87 33.3
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 6.1e-06 57.8 148 27.0
CiPaw.13G160000 Carya illinoinensis HOM05D000001 ORTHO05D000003 6.1e-06 57.8 213 22.1
Ca_26205_v3 Cicer arietinum L. HOM05D002453 ORTHO05D008746 6.1e-06 57.8 104 33.7
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 6.1e-06 57.8 186 22.0
FAN01G0244 Fragaria x ananassa HOM05D006556 ORTHO05D008146 6.1e-06 57.8 156 29.5
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 8.0e-06 57.4 125 31.2
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 8.0e-06 57.4 214 24.8
Gorai.009G384000 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.0e-06 57.4 126 33.3
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 8.0e-06 57.4 153 28.8
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 8.0e-06 57.4 92 35.9
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 8.0e-06 57.4 131 22.1
TPR.G34116 Trifolium pratense HOM05D000001 ORTHO05D000003 8.0e-06 57.4 186 22.0


User provided reference genes

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