Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G011190 Citrullus lanatus HOM05D005782 ORTHO05D007436 2.0e-308 1061.6 531 100.0
CsaV3_2G009240 Cucumis sativus L. HOM05D005782 ORTHO05D007436 6.6e-187 657.9 532 69.0
Sed0017765 Sechium edule HOM05D005782 ORTHO05D007436 1.2e-167 594.0 533 64.7
MELO3C003909.2 Cucumis melo HOM05D005782 ORTHO05D007436 1.2e-153 547.4 397 75.1
Haze_21249 Corylus avellana HOM05D005782 ORTHO05D007436 1.7e-139 500.4 546 55.5
CSS0047952 Camellia sinensis var. sinensis HOM05D005782 ORTHO05D007436 1.2e-132 477.6 530 53.4
TWI32G0667 Tripterygium wilfordii HOM05D005782 ORTHO05D007436 7.6e-127 458.4 540 50.4
Potri.018G150000 Populus trichocarpa HOM05D005782 ORTHO05D007436 1.2e-124 451.1 548 50.0
Potri.006G080100 Populus trichocarpa HOM05D005782 ORTHO05D007436 8.7e-123 444.9 495 53.7
HanXRQChr03g0067061 Helianthus annuus HOM05D005782 ORTHO05D007436 3.7e-121 439.5 539 50.1
TAR383G0506 Trochodendron aralioides HOM05D005782 ORTHO05D007436 6.3e-121 438.7 533 51.0
THA.LOC104803572 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 3.4e-119 433.0 537 49.3
Actinidia07556 Actinidia chinensis HOM05D005782 ORTHO05D007436 5.9e-119 432.2 478 52.7
GSVIVG01032240001 Vitis vinifera HOM05D005782 ORTHO05D007436 5.0e-118 429.1 472 52.3
Cc06_g23670 Coffea canephora HOM05D005782 ORTHO05D007436 3.2e-117 426.4 533 49.9
Eucgr.C02158 Eucalyptus grandis HOM05D005782 ORTHO05D007436 1.2e-116 424.5 529 48.8
Atru.chr7.1036 Acer truncatum HOM05D005782 ORTHO05D007436 3.6e-116 422.9 538 49.6
Manes.05G205900 Manihot esculenta HOM05D005782 ORTHO05D007436 3.6e-116 422.9 536 49.4
Glyma.08G359700 Glycine max HOM05D005782 ORTHO05D007436 3.0e-115 419.9 536 47.9
MSTRG.19410 Avicennia marina HOM05D005782 ORTHO05D007436 8.7e-115 418.3 535 48.8
Sabra06G0060600 Salix brachista HOM05D005782 ORTHO05D007436 1.9e-114 417.2 582 46.4
Sp7g28920 Schrenkiella parvula HOM05D005782 ORTHO05D007436 3.3e-114 416.4 546 47.8
SGA_v2.0_scaffold318G48485 Striga asiatica HOM05D005782 ORTHO05D007436 4.8e-113 412.5 539 47.5
PSO170G1242 Papaver somniferum HOM05D005782 ORTHO05D007436 1.8e-112 410.6 544 44.7
PGR142G1608 Punica granatum HOM05D005782 ORTHO05D007436 1.8e-112 410.6 474 51.9
Nn8g41244 Nelumbo nucifera HOM05D005782 ORTHO05D007436 2.4e-112 410.2 510 49.0
CARHR238950 Cardamine hirsuta HOM05D005782 ORTHO05D007436 3.1e-112 409.8 541 47.5
Ah.13g066690 Amaranthus hybridus HOM05D005782 ORTHO05D007436 1.5e-111 407.5 541 49.0
FAN12G2371 Fragaria x ananassa HOM05D005782 ORTHO05D007436 7.7e-111 405.2 535 47.5
PSO063G1085 Papaver somniferum HOM05D005782 ORTHO05D007436 1.0e-110 404.8 541 44.5
Prupe.1G002100 Prunus persica HOM05D005782 ORTHO05D007436 1.3e-110 404.4 510 50.2
MSTRG.5969 Avicennia marina HOM05D005782 ORTHO05D007436 5.0e-110 402.5 537 46.9
Gohir.D05G000500 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.1e-109 401.4 497 49.3
Gorai.009G000300 Gossypium raimondii HOM05D005782 ORTHO05D007436 1.4e-109 401.0 497 49.3
EL10Ac3g05861 Beta vulgaris HOM05D005782 ORTHO05D007436 1.6e-108 397.5 551 45.4
Gohir.A05G000300 Gossypium hirsutum HOM05D005782 ORTHO05D007436 1.6e-108 397.5 497 49.3
FvH4_4g00180 Fragaria vesca HOM05D005782 ORTHO05D007436 3.6e-108 396.4 538 46.7
Thecc.09G201300 Theobroma cacao HOM05D005782 ORTHO05D007436 3.6e-108 396.4 541 48.6
Aqoxy7G02605 Aquilegia oxysepala HOM05D005782 ORTHO05D007436 7.9e-108 395.2 538 45.7
Migut.J00857 Erythranthe guttata HOM05D005782 ORTHO05D007436 7.9e-108 395.2 555 47.7
Oeu021242.1 Olea europaea HOM05D005782 ORTHO05D007436 5.1e-107 392.5 515 48.0
QL11p006989 Quercus lobata HOM05D005782 ORTHO05D007436 6.7e-107 392.1 401 56.1
Lj2g0003070 Lotus japonicus HOM05D005782 ORTHO05D007436 6.3e-105 385.6 459 50.5
BcaNung03419 Brassica carinata HOM05D005782 ORTHO05D007436 1.1e-104 384.8 548 45.4
VMungo0464G0621 Vigna mungo HOM05D005782 ORTHO05D007436 1.4e-104 384.4 489 48.1
Lsat_1_v5_gn_7_57180 Lactuca sativa HOM05D005782 ORTHO05D007436 4.1e-104 382.9 531 45.8
Carub.0007s0948 Capsella rubella HOM05D005782 ORTHO05D007436 5.3e-104 382.5 547 45.7
Cfa012886 Carpinus fangiana HOM05D005782 ORTHO05D007436 1.5e-103 380.9 385 56.9
Sopen07g022440 Solanum pennellii HOM05D005782 ORTHO05D007436 1.5e-103 380.9 538 45.5
TPR.G21340 Trifolium pratense HOM05D005782 ORTHO05D007436 1.5e-103 380.9 469 49.5
RcHm_v2.0_Chr4g0384781 Rosa chinensis HOM05D005782 ORTHO05D007436 2.0e-103 380.6 495 49.3
Thhalv10025215m.g Eutrema salsugineum HOM05D005782 ORTHO05D007436 2.6e-103 380.2 544 44.7
CAN.G63.1 Capsicum annuum HOM05D005782 ORTHO05D007436 4.5e-103 379.4 537 47.7
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 7.7e-103 378.6 512 46.1
AL7G21030 Arabidopsis lyrata HOM05D005782 ORTHO05D007436 1.0e-102 378.3 546 45.4
BraA01t00665Z Brassica rapa HOM05D005782 ORTHO05D007436 1.0e-102 378.3 543 44.9
A01p07130 Brassica napus HOM05D005782 ORTHO05D007436 1.3e-102 377.9 545 44.8
C01p07890 Brassica napus HOM05D005782 ORTHO05D007436 2.2e-102 377.1 544 45.4
BolC1t00776H Brassica oleracea HOM05D005782 ORTHO05D007436 2.2e-102 377.1 544 45.4
MD04G1001800 Malus domestica HOM05D005782 ORTHO05D007436 2.9e-102 376.7 465 49.9
AT4G31040 Arabidopsis thaliana HOM05D005782 ORTHO05D007436 3.8e-102 376.3 548 44.3
BcaC09g51891 Brassica carinata HOM05D005782 ORTHO05D007436 5.0e-102 375.9 544 45.4
Lalb_Chr24g0401711 Lupinus albus HOM05D005782 ORTHO05D007436 2.5e-101 373.6 466 48.3
arahy.Tifrunner.gnm1.ann1.05JXYY Arachis hypogaea HOM05D005782 ORTHO05D007436 9.4e-101 371.7 476 48.5
Sc09g0007530 Simmondsia chinensis HOM05D005782 ORTHO05D007436 4.7e-100 369.4 459 48.8
Aa31LG2G19280 Aethionema arabicum HOM05D005782 ORTHO05D007436 6.1e-100 369.0 517 46.4
arahy.Tifrunner.gnm1.ann1.PZIB41 Arachis hypogaea HOM05D005782 ORTHO05D007436 7.9e-100 368.6 476 48.5
ATR0626G413 Amborella trichopoda HOM05D005782 ORTHO05D007436 1.4e-99 367.9 504 45.8
AUR62015437 Chenopodium quinoa HOM05D005782 ORTHO05D007436 5.2e-99 365.9 522 45.8
MBI13_g33574_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 8.8e-99 365.2 509 44.2
Rhsim01G0103700 Rhododendron simsii HOM05D005782 ORTHO05D007436 8.8e-99 365.2 532 43.6
MD10G1290500 Malus domestica HOM05D005782 ORTHO05D007436 5.7e-98 362.5 447 50.6
Nitab4.5_0000170g0200 Nicotiana tabacum HOM05D005782 ORTHO05D007436 5.7e-98 362.5 516 45.7
ECA240G2713 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-97 360.5 501 47.5
RhsimUnG0238700 Rhododendron simsii HOM05D005782 ORTHO05D007436 2.2e-97 360.5 543 43.1
CANSAT80G1379 Cannabis sativa HOM05D005782 ORTHO05D007436 5.3e-96 355.9 482 46.9
Nitab4.5_0000807g0130 Nicotiana tabacum HOM05D005782 ORTHO05D007436 1.2e-95 354.8 542 44.6
FAN17G0526 Fragaria x ananassa HOM05D005782 ORTHO05D007436 1.8e-91 340.9 530 42.3
CiPaw.08G000500 Carya illinoinensis HOM05D005782 ORTHO05D007436 9.1e-88 328.6 363 54.8
CDE02G4601 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 3.5e-87 326.6 461 44.5
AUR62002224 Chenopodium quinoa HOM05D005782 ORTHO05D007436 8.5e-86 322.0 548 41.4
Zm00001eb404240 Zea mays HOM05D005782 ORTHO05D007436 1.2e-84 318.2 477 40.3
Glyma.01G001100 Glycine max HOM05D005782 ORTHO05D007436 2.7e-84 317.0 368 48.9
Os08g0224300 Oryza sativa ssp. japonica HOM05D005782 ORTHO05D007436 6.1e-84 315.8 460 42.4
BcaNung02727 Brassica carinata HOM05D005782 ORTHO05D007436 5.2e-83 312.8 542 40.8
FAN22G1527 Fragaria x ananassa HOM05D005782 ORTHO05D007436 8.8e-83 312.0 393 49.9
Zm00001eb000750 Zea mays HOM05D005782 ORTHO05D007436 2.6e-82 310.5 480 40.4
CDE04G3649 Ceratophyllum demersum HOM05D005782 ORTHO05D007436 4.4e-82 309.7 462 42.9
Psat1g051920 Pisum sativum HOM05D005782 ORTHO05D007436 1.3e-81 308.1 448 43.8
Zm00001eb000720 Zea mays HOM05D005782 ORTHO05D007436 1.4e-80 304.7 477 39.8
DCAR_014583 Daucus carota HOM05D005782 ORTHO05D010280 3.8e-78 296.6 310 51.9
Hund04583 Selenicereus undatus HOM05D005782 ORTHO05D007436 1.2e-76 291.6 535 38.3
Cpa.g.sc91.69 Carica papaya HOM05D005782 ORTHO05D007436 6.1e-76 289.3 277 57.8
vmacro20737 Vaccinium macrocarpon HOM05D005782 ORTHO05D007436 4.0e-75 286.6 518 40.5
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.2e-74 285.0 386 47.7
Ca_25640_v3 Cicer arietinum L. HOM05D005782 ORTHO05D007436 2.6e-74 283.9 274 58.4
Medtr6g093210 Medicago truncatula HOM05D005782 ORTHO05D007436 2.2e-73 280.8 401 45.1
Duzib150G0032 Durio zibethinus HOM05D005782 ORTHO05D007436 3.1e-72 276.9 386 46.1
Lj5A796G22 Lonicera japonica HOM05D005782 ORTHO05D007436 2.7e-71 273.9 294 53.7
unitig_578.g15870 Utricularia gibba HOM05D000412 ORTHO05D000429 1.4e-64 251.5 491 34.4
Gohir.A05G000250 Gossypium hirsutum HOM05D005782 ORTHO05D007436 5.4e-64 249.6 310 48.7
BolC7t46295H Brassica oleracea HOM05D005782 ORTHO05D007436 5.9e-63 246.1 442 39.4
A03p60520 Brassica napus HOM05D005782 ORTHO05D007436 3.0e-62 243.8 285 51.2
BraA03t15091Z Brassica rapa HOM05D005782 ORTHO05D007436 3.0e-62 243.8 285 51.2
C07p58400 Brassica napus HOM05D005782 ORTHO05D007436 1.6e-60 238.0 439 39.0
Phvul.L001608 Phaseolus vulgaris HOM05D005782 ORTHO05D007436 3.1e-59 233.8 251 51.4
Pp3c4_7870 Physcomitrium patens HOM05D005782 ORTHO05D007436 1.2e-58 231.9 506 34.2
Mapoly0066s0016 Marchantia polymorpha HOM05D005782 ORTHO05D007436 3.4e-58 230.3 522 32.6
THA.LOC104804495 Tarenaya hassleriana HOM05D005782 ORTHO05D007436 1.3e-57 228.4 246 54.1
Ciclev10033590m.g Citrus clementina HOM05D005782 ORTHO05D007436 2.3e-54 217.6 287 46.0
HPP92_020428 Vanilla planifolia HOM05D005782 ORTHO05D007436 3.9e-54 216.9 259 50.2
Ciclev10033693m.g Citrus clementina HOM05D005782 ORTHO05D007436 6.6e-54 216.1 245 52.7
SEGI_19916 Sequoiadendron giganteum HOM05D005782 ORTHO05D007436 2.3e-51 207.6 416 33.7
Peaxi162Scf00474g00214 Petunia axillaris HOM05D005782 ORTHO05D007436 2.9e-49 200.7 295 45.1
Solyc07g042800.2 Solanum lycopersicum HOM05D005782 ORTHO05D007436 2.3e-46 191.0 295 43.1
Pp3c10_12270 Physcomitrium patens HOM05D005782 ORTHO05D007436 8.6e-46 189.1 501 32.7
AagrBONN_evm.TU.Sc2ySwM_117.1743 Anthoceros agrestis HOM05D005782 ORTHO05D007436 1.9e-45 188.0 443 32.7
CBR_g84827 Chara braunii HOM05D005782 ORTHO05D007436 4.7e-44 183.3 419 34.4
Actinidia02524 Actinidia chinensis HOM05D005782 ORTHO05D007436 5.8e-42 176.4 152 59.2
Peaxi162Scf00474g00221 Petunia axillaris HOM05D005782 ORTHO05D007436 3.6e-36 157.1 187 51.9
HPP92_020430 Vanilla planifolia HOM05D005782 ORTHO05D007436 7.1e-32 142.9 177 42.9
QL11p007002 Quercus lobata HOM05D005782 ORTHO05D007436 8.1e-28 129.4 67 89.6
Cfa012883 Carpinus fangiana HOM05D005782 ORTHO05D000300 2.4e-27 127.9 100 63.0
Solyc07g042820.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 5.4e-24 116.7 193 39.9
A08p18910 Brassica napus HOM05D005782 ORTHO05D007436 3.1e-19 100.9 298 31.2
Actinidia02544 Actinidia chinensis HOM05D005782 ORTHO05D007436 2.3e-14 84.7 54 77.8
Cre06.g260250 Chlamydomonas reinhardtii HOM05D005782 ORTHO05D007436 1.1e-13 82.4 273 26.4
BcaC01g01117 Brassica carinata HOM05D005782 ORTHO05D027183 5.6e-13 80.1 315 27.6
Dinv26495 Davidia involucrata HOM05D000001 ORTHO05D010280 3.7e-12 77.4 45 82.2
HPP92_020431 Vanilla planifolia HOM05D005782 ORTHO05D007436 1.8e-11 75.1 138 34.1
Lj5A796T24 Lonicera japonica HOM05D005782 ORTHO05D007436 2.4e-11 74.7 48 66.7
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.0e-11 73.9 220 29.1
AUR62044085 Chenopodium quinoa HOM05D005782 ORTHO05D007436 4.5e-10 70.5 219 28.8
Solyc07g042810.3 Solanum lycopersicum HOM05D005782 ORTHO05D007436 4.5e-10 70.5 49 73.5
PRCOL_00003075 Prasinoderma coloniale HOM05D005782 ORTHO05D007436 7.1e-08 63.2 272 22.4
MBI15_g25469_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 3.0e-06 57.8 30 80.0


User provided reference genes

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