Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 0.0e+00 1531.5 864 100.0
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 0.0e+00 1285.0 837 89.1
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 0.0e+00 1264.2 832 88.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 0.0e+00 1125.9 828 79.8
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.1e-211 740.0 817 59.9
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 6.2e-211 738.4 837 59.0
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-210 737.6 817 59.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 3.4e-209 732.6 824 55.6
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 4.6e-206 722.2 841 56.1
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.6e-203 713.8 816 57.2
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 3.7e-203 712.6 834 56.7
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.8e-200 702.6 838 57.9
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.2e-199 699.5 844 55.9
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.7e-198 696.4 893 52.4
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 3.3e-196 689.5 848 55.9
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 5.6e-196 688.7 822 56.7
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.6e-195 687.2 820 56.3
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.8e-195 685.6 822 56.7
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 1.3e-192 677.6 808 54.6
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.6e-187 660.6 828 55.3
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 4.1e-186 656.0 817 56.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 3.4e-185 652.9 849 52.4
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.1e-183 647.9 847 54.3
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.6e-182 644.0 841 48.4
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.3e-181 640.2 812 49.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 3.9e-181 639.4 846 53.3
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 6.7e-181 638.6 837 50.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 6.7e-181 638.6 872 49.8
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.1e-180 637.9 816 54.2
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 5.7e-180 635.6 840 52.1
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 2.6e-177 626.7 835 54.1
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.6e-177 626.7 839 54.7
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 7.7e-177 625.2 791 50.1
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.0e-176 624.8 820 51.7
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.5e-175 620.2 813 49.8
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.5e-175 620.2 846 52.4
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 5.5e-175 619.0 830 49.6
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.2e-175 618.6 801 52.7
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 9.4e-175 618.2 846 52.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.6e-174 617.5 792 47.5
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 3.9e-173 612.8 860 50.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 2.6e-172 610.1 828 53.0
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.8e-170 604.0 825 55.0
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 3.1e-170 603.2 812 52.2
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.3e-170 602.4 842 51.3
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 1.2e-169 601.3 842 51.3
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 7.7e-169 598.6 841 53.6
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.3e-168 597.8 791 52.1
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.7e-168 597.4 832 52.3
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.2e-168 597.0 825 52.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 2.9e-168 596.7 780 55.8
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.5e-168 595.5 800 45.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 8.5e-168 595.1 869 50.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 8.0e-166 588.6 836 46.5
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 8.0e-166 588.6 862 49.4
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.0e-165 588.2 867 48.4
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.4e-165 587.8 848 48.6
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 5.2e-165 585.9 819 51.2
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.1e-164 584.7 802 51.7
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 2.6e-164 583.6 830 48.8
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.7e-163 580.9 824 47.0
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.8e-163 580.1 838 49.8
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 6.3e-163 578.9 788 46.4
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 8.2e-163 578.6 803 50.6
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 8.2e-163 578.6 866 46.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 9.1e-162 575.1 845 49.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.6e-161 574.3 805 46.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 8.5e-160 568.5 843 50.8
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 2.7e-158 563.5 834 50.7
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 4.7e-158 562.8 805 49.9
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.1e-158 562.4 689 56.9
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.2e-157 559.3 845 50.3
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 6.7e-157 558.9 806 49.3
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 8.8e-157 558.5 836 49.9
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 7.5e-156 555.4 803 49.4
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 7.5e-156 555.4 825 51.0
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-155 554.3 825 51.2
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 4.8e-155 552.7 775 46.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 2.4e-154 550.4 781 50.3
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.1e-154 550.1 829 48.1
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 1.9e-151 540.8 819 48.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 4.7e-150 536.2 834 47.8
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.3e-149 533.9 825 46.8
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.2e-145 521.5 816 48.0
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 2.3e-144 517.3 682 55.4
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 5.5e-143 512.7 804 47.1
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 7.2e-143 512.3 797 48.3
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 8.0e-142 508.8 797 48.2
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.0e-141 508.4 833 46.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 6.8e-141 505.8 494 58.5
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 1.3e-139 501.5 796 47.6
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.7e-139 501.1 796 47.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 9.2e-138 495.4 845 47.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 7.3e-135 485.7 822 47.4
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.2e-134 485.0 785 48.7
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.6e-134 484.6 697 50.9
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.1e-134 484.2 785 48.9
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.0e-133 479.9 856 42.9
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.5e-119 434.9 822 43.9
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.0e-116 424.5 752 47.1
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.2e-115 421.0 929 40.4
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.0e-112 410.6 744 44.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.5e-111 408.3 833 43.3
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 3.3e-111 407.1 490 50.2
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.1e-109 402.1 867 42.3
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 5.8e-108 396.4 884 41.9
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 2.9e-107 394.0 901 41.2
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 5.8e-92 343.2 871 38.0
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.8e-88 331.6 833 37.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.7e-83 315.1 606 43.6
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 9.0e-69 266.2 250 59.2
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 1.5e-63 248.8 817 29.5
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.0e-59 236.1 484 37.2
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 8.5e-59 233.0 566 33.2
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.4e-58 232.3 484 37.2
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 9.4e-50 203.0 460 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.7e-46 192.2 776 31.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.4e-37 162.5 175 47.4
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.3e-37 160.6 115 66.1
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 5.0e-35 154.1 218 39.4
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.5e-34 151.8 198 48.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 8.3e-30 136.7 167 50.3
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 1.0e-27 129.8 441 28.6
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.9e-27 128.3 383 32.1
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 6.6e-27 127.1 155 46.5
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.3e-26 124.8 736 29.9
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.3e-16 92.0 161 39.8
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 6.8e-16 90.5 150 45.3
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 5.4e-13 80.9 129 42.6
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 2.3e-11 75.5 94 43.6
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.1e-10 73.2 145 36.6
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 1.2e-07 63.2 47 61.7
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 5.8e-07 60.8 66 53.0
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 4.9e-06 57.8 70 48.6


User provided reference genes

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