Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.8e-84 315.8 153 100.0
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 8.0e-29 131.0 62 98.4
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 1.8e-28 129.8 62 96.8
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 5.2e-28 128.3 62 95.2
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 5.2e-28 128.3 62 95.2
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 5.2e-28 128.3 62 95.2
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 5.2e-28 128.3 62 95.2
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.5e-27 126.7 62 93.5
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.9e-26 122.5 62 88.7
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.9e-26 121.7 62 88.7
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.9e-26 121.7 62 88.7
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 6.4e-26 121.3 62 90.3
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-25 119.8 62 87.1
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 2.4e-25 119.4 62 87.1
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.4e-25 119.4 61 88.5
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 4.1e-25 118.6 62 85.5
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 4.1e-25 118.6 62 87.1
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 4.1e-25 118.6 62 85.5
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 5.4e-25 118.2 62 85.5
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 7.0e-25 117.9 62 87.1
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 9.2e-25 117.5 62 85.5
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 9.2e-25 117.5 62 85.5
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 2.7e-24 115.9 62 85.5
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 2.7e-24 115.9 62 83.9
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 3.5e-24 115.5 62 85.5
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 3.5e-24 115.5 62 85.5
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.5e-24 115.5 62 83.9
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 4.6e-24 115.2 64 85.9
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 6.0e-24 114.8 60 85.0
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 7.8e-24 114.4 62 83.9
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 7.8e-24 114.4 62 83.9
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.0e-23 114.0 62 82.3
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 1.0e-23 114.0 62 83.9
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 1.3e-23 113.6 62 83.9
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 62 83.9
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 62 83.9
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 62 83.9
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 62 83.9
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 62 83.9
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.7e-23 113.2 61 83.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 5.0e-23 111.7 70 72.9
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 1.5e-22 110.2 57 86.0
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 3.3e-22 109.0 62 82.3
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 5.6e-22 108.2 62 83.9
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 2.8e-21 105.9 61 80.3
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 2.8e-21 105.9 61 80.3
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 8.1e-21 104.4 61 78.7
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.4e-20 103.6 62 83.9
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 1.4e-20 103.6 62 80.6
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 1.4e-20 103.6 62 80.6
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 1.8e-20 103.2 61 80.3
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 6.8e-20 101.3 61 77.0
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 1.5e-19 100.1 59 78.0
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 1.5e-19 100.1 58 77.6
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 2.6e-19 99.4 86 59.3
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.3e-18 97.1 62 72.6
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.3e-18 97.1 62 72.6
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 1.9e-17 93.2 50 82.0
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 1.9e-17 93.2 51 84.3
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 4.1e-17 92.0 61 73.8
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 1.7e-15 86.7 46 84.8
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.1e-15 85.1 61 63.9
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.5e-14 82.8 61 62.3
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 1.2e-13 80.5 53 75.5
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 2.1e-13 79.7 61 63.9
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 2.8e-13 79.3 51 78.4
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.5e-11 73.6 62 61.3
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 1.5e-11 73.6 44 75.0
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.4e-11 72.4 61 60.7
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.4e-10 68.2 61 57.4
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 4.1e-09 65.5 37 81.1
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 1.6e-08 63.5 60 53.3
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 1.6e-08 63.5 38 81.6
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 1.5e-06 57.0 61 49.2
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 9.6e-06 54.3 61 47.5


User provided reference genes

Program Settings