Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G009420 Citrullus lanatus HOM05D007470 ORTHO05D009337 2.0e-208 728.8 359 100.0
CsaV3_2G034020 Cucumis sativus L. HOM05D007470 ORTHO05D009337 1.1e-105 387.5 310 68.7
Sed0023625 Sechium edule HOM05D007470 ORTHO05D009337 1.6e-91 340.5 234 74.8
MELO3C008174.2 Cucumis melo HOM05D007470 ORTHO05D009337 4.9e-85 318.9 289 61.6
QL02p070898 Quercus lobata HOM05D007470 ORTHO05D009337 2.2e-77 293.5 297 55.2
CANSAT64G2994 Cannabis sativa HOM05D007470 ORTHO05D009337 4.9e-77 292.4 310 53.2
Gohir.A10G071600 Gossypium hirsutum HOM05D007470 ORTHO05D009337 1.2e-75 287.7 311 51.8
CiPaw.03G057800 Carya illinoinensis HOM05D007470 ORTHO05D009337 1.6e-75 287.3 278 56.5
Thecc.04G040000 Theobroma cacao HOM05D007470 ORTHO05D009337 2.1e-75 287.0 309 51.1
TAR629G2381 Trochodendron aralioides HOM05D007470 ORTHO05D009337 3.5e-75 286.2 309 52.4
RcHm_v2.0_Chr2g0175931 Rosa chinensis HOM05D007470 ORTHO05D009337 7.8e-75 285.0 311 52.4
Atru.chr6.2593 Acer truncatum HOM05D007470 ORTHO05D009337 1.7e-74 283.9 280 55.4
Gohir.D10G079400 Gossypium hirsutum HOM05D007470 ORTHO05D009337 3.0e-74 283.1 311 50.5
Gorai.011G086500 Gossypium raimondii HOM05D007470 ORTHO05D009337 3.0e-74 283.1 311 51.1
Phvul.001G088400 Phaseolus vulgaris HOM05D007470 ORTHO05D009337 6.6e-74 282.0 297 53.9
MD17G1001700 Malus domestica HOM05D007470 ORTHO05D009337 1.1e-73 281.2 289 52.9
Medtr7g028600 Medicago truncatula HOM05D007470 ORTHO05D009337 1.1e-73 281.2 310 51.9
Prupe.3G308400 Prunus persica HOM05D007470 ORTHO05D009337 1.5e-73 280.8 311 51.1
CSS0012152 Camellia sinensis var. sinensis HOM05D007470 ORTHO05D009337 1.2e-72 277.7 278 56.5
FvH4_6g53800 Fragaria vesca HOM05D007470 ORTHO05D009337 1.2e-72 277.7 311 50.2
arahy.Tifrunner.gnm1.ann1.Y5JERX Arachis hypogaea HOM05D007470 ORTHO05D009337 2.1e-72 276.9 283 53.0
Aqoxy3G01589 Aquilegia oxysepala HOM05D007470 ORTHO05D009337 4.7e-72 275.8 279 55.6
arahy.Tifrunner.gnm1.ann1.WUC6HZ Arachis hypogaea HOM05D007470 ORTHO05D009337 4.7e-72 275.8 283 52.7
PSO017G3529 Papaver somniferum HOM05D007470 ORTHO05D009337 4.7e-72 275.8 303 51.5
PSO478G1374 Papaver somniferum HOM05D007470 ORTHO05D009337 6.2e-72 275.4 280 53.9
TWI34G0784 Tripterygium wilfordii HOM05D007470 ORTHO05D009337 8.1e-72 275.0 278 54.3
GSVIVG01033060001 Vitis vinifera HOM05D007470 ORTHO05D009337 8.1e-72 275.0 277 54.5
Glyma.19G094500 Glycine max HOM05D007470 ORTHO05D009337 1.8e-71 273.9 287 53.0
Lalb_Chr08g0235091 Lupinus albus HOM05D007470 ORTHO05D009337 5.2e-71 272.3 290 52.8
FAN02G0284 Fragaria x ananassa HOM05D007470 ORTHO05D009337 8.9e-71 271.6 324 50.0
Dinv38225 Davidia involucrata HOM05D007470 ORTHO05D009337 1.2e-70 271.2 217 63.1
Nn3g16402 Nelumbo nucifera HOM05D007470 ORTHO05D009337 2.0e-70 270.4 308 51.3
Ciclev10016219m.g Citrus clementina HOM05D007470 ORTHO05D009337 2.6e-70 270.0 280 52.9
CAN.G1525.7 Capsicum annuum HOM05D007470 ORTHO05D009337 5.8e-70 268.9 310 50.0
Potri.017G067804 Populus trichocarpa HOM05D007470 ORTHO05D009337 7.6e-70 268.5 267 53.6
Sopen02g017280 Solanum pennellii HOM05D007470 ORTHO05D009337 9.9e-70 268.1 313 50.2
Lj1g0008589 Lotus japonicus HOM05D007470 ORTHO05D009337 1.3e-69 267.7 273 53.8
Haze_14895 Corylus avellana HOM05D007470 ORTHO05D009337 2.2e-69 266.9 260 56.9
Sabra17G0058800 Salix brachista HOM05D007470 ORTHO05D009337 4.9e-69 265.8 277 52.3
SalBow4G2156 Salvia bowleyana HOM05D007470 ORTHO05D009337 4.9e-69 265.8 313 49.5
Psat3g162680 Pisum sativum HOM05D007470 ORTHO05D009337 6.4e-69 265.4 284 51.4
Solyc02g068180.3 Solanum lycopersicum HOM05D007470 ORTHO05D009337 6.4e-69 265.4 310 50.3
Manes.11G086800 Manihot esculenta HOM05D007470 ORTHO05D009337 1.4e-68 264.2 316 48.4
COL.COLO4_13289 Corchorus olitorius HOM05D007470 ORTHO05D009337 5.4e-68 262.3 262 53.8
vmacro05972 Vaccinium macrocarpon HOM05D007470 ORTHO05D009337 5.4e-68 262.3 279 52.7
Migut.F00049 Erythranthe guttata HOM05D007470 ORTHO05D009337 9.2e-68 261.5 291 50.2
Actinidia36214 Actinidia chinensis HOM05D007470 ORTHO05D009337 7.8e-67 258.5 278 53.2
BraA10t44499Z Brassica rapa HOM05D007470 ORTHO05D009337 3.0e-66 256.5 288 50.0
MSTRG.3067 Avicennia marina HOM05D007470 ORTHO05D009337 3.9e-66 256.1 298 50.0
Peaxi162Scf00304g00836 Petunia axillaris HOM05D007470 ORTHO05D009337 5.1e-66 255.8 262 54.6
A10p24330 Brassica napus HOM05D007470 ORTHO05D009337 8.7e-66 255.0 288 49.7
BcaC04g19060 Brassica carinata HOM05D007470 ORTHO05D009337 1.1e-65 254.6 288 49.7
CARHR199250 Cardamine hirsuta HOM05D007470 ORTHO05D009337 1.1e-65 254.6 315 47.3
C09p63010 Brassica napus HOM05D007470 ORTHO05D009337 3.3e-65 253.1 288 49.3
HanXRQChr17g0551531 Helianthus annuus HOM05D007470 ORTHO05D009337 3.3e-65 253.1 289 48.8
Thhalv10014315m.g Eutrema salsugineum HOM05D007470 ORTHO05D009337 4.3e-65 252.7 287 49.5
TPR.G8551 Trifolium pratense HOM05D007470 ORTHO05D009337 4.3e-65 252.7 260 54.6
AT5G14100 Arabidopsis thaliana HOM05D007470 ORTHO05D009337 5.6e-65 252.3 307 49.2
BcaB08g36958 Brassica carinata HOM05D007470 ORTHO05D009337 9.6e-65 251.5 320 45.9
Sp6g29900 Schrenkiella parvula HOM05D007470 ORTHO05D009337 9.6e-65 251.5 278 49.3
AL6G24760 Arabidopsis lyrata HOM05D007470 ORTHO05D009337 2.1e-64 250.4 316 46.8
Carub.0006s1229 Capsella rubella HOM05D007470 ORTHO05D009337 2.1e-64 250.4 305 48.5
Cc02_g35820 Coffea canephora HOM05D007470 ORTHO05D009337 3.6e-64 249.6 277 50.9
SGA_v2.0_scaffold253G45183 Striga asiatica HOM05D007470 ORTHO05D009337 3.6e-64 249.6 279 50.5
Aa31LG11G14900 Aethionema arabicum HOM05D007470 ORTHO05D009337 1.8e-63 247.3 293 48.8
DCAR_019191 Daucus carota HOM05D007470 ORTHO05D009337 2.4e-63 246.9 263 52.5
Lj7A611T38 Lonicera japonica HOM05D007470 ORTHO05D009337 2.4e-63 246.9 186 66.1
Eucgr.I01631 Eucalyptus grandis HOM05D007470 ORTHO05D009337 9.0e-63 245.0 291 47.4
AUR62003423 Chenopodium quinoa HOM05D007470 ORTHO05D009337 2.0e-62 243.8 308 44.2
VMungo1383G3071 Vigna mungo HOM05D000808 ORTHO05D009337 3.4e-62 243.0 171 66.7
ECA246G0009 Erigeron canadensis HOM05D007470 ORTHO05D009337 5.8e-62 242.3 267 50.2
Zm00001eb112830 Zea mays HOM05D007470 ORTHO05D009337 3.8e-61 239.6 292 47.9
Lsat_1_v5_gn_0_3201 Lactuca sativa HOM05D007470 ORTHO05D009337 6.4e-61 238.8 271 47.6
BolC9t59139H Brassica oleracea HOM05D002467 ORTHO05D009337 1.4e-60 237.7 263 50.6
Nitab4.5_0003376g0110 Nicotiana tabacum HOM05D007470 ORTHO05D009337 4.2e-60 236.1 321 44.9
Os11g0490800 Oryza sativa ssp. japonica HOM05D007470 ORTHO05D009337 9.3e-60 235.0 296 45.6
CSS0031207 Camellia sinensis var. sinensis HOM05D007470 ORTHO05D009337 1.0e-58 231.5 178 66.3
ATR0088G051 Amborella trichopoda HOM05D007470 ORTHO05D009337 5.1e-58 229.2 264 48.1
TWI34G1845 Tripterygium wilfordii HOM05D007470 ORTHO05D009337 6.6e-58 228.8 211 57.3
Nitab4.5_0000760g0070 Nicotiana tabacum HOM05D007470 ORTHO05D009337 4.3e-57 226.1 211 57.8
Sc03g0006360 Simmondsia chinensis HOM05D007470 ORTHO05D009337 5.6e-57 225.7 186 61.8
Nitab4.5_0010271g0010 Nicotiana tabacum HOM05D007470 ORTHO05D009337 2.4e-55 220.3 197 59.9
unitig_0.g1935 Utricularia gibba HOM05D007470 ORTHO05D009337 4.2e-52 209.5 277 43.3
Cpa.g.sc70.121 Carica papaya HOM05D007470 ORTHO05D009337 7.1e-52 208.8 218 51.8
AUR62029418 Chenopodium quinoa HOM05D007470 ORTHO05D009337 4.6e-51 206.1 211 50.7
Nitab4.5_0001892g0140 Nicotiana tabacum HOM05D007470 ORTHO05D009337 3.3e-49 199.9 339 39.2
Rhsim10G0004900 Rhododendron simsii HOM05D007470 ORTHO05D009337 2.8e-48 196.8 279 44.4
CDE05G3681 Ceratophyllum demersum HOM05D007470 ORTHO05D009337 8.1e-48 195.3 213 50.2
Pp3c3_25680 Physcomitrium patens HOM05D007470 ORTHO05D009337 5.5e-44 182.6 275 40.0
EL10Ac6g15436 Beta vulgaris HOM05D007470 ORTHO05D009337 7.1e-44 182.2 283 38.9
MBI11_g05336_MAGBIO Magnolia biondii HOM05D007470 ORTHO05D009337 4.8e-40 169.5 268 40.7
Mapoly0035s0112 Marchantia polymorpha HOM05D007470 ORTHO05D009337 4.8e-40 169.5 269 36.8
CDE05G2906 Ceratophyllum demersum HOM05D007470 ORTHO05D009337 2.4e-39 167.2 172 50.6
Psat7g092720 Pisum sativum HOM05D007470 ORTHO05D009337 5.3e-39 166.0 106 75.5
AagrBONN_evm.TU.Sc2ySwM_368.2376 Anthoceros agrestis HOM05D007470 ORTHO05D009337 5.8e-38 162.5 263 38.4
CBR_g57502 Chara braunii HOM05D007470 ORTHO05D009337 8.7e-34 148.7 178 46.1
MCO14G275 Micromonas commoda HOM05D007470 ORTHO05D009337 3.8e-29 133.3 251 35.9
SMO367G1290 Selaginella moellendorffii HOM05D007470 ORTHO05D009337 8.5e-29 132.1 177 42.4
HPP92_024734 Vanilla planifolia HOM05D007470 ORTHO05D009337 1.5e-25 121.3 123 49.6
SEGI_01524 Sequoiadendron giganteum HOM05D007470 ORTHO05D009337 2.4e-23 114.0 94 58.5
Cre16.g687550 Chlamydomonas reinhardtii HOM05D007470 ORTHO05D009337 4.5e-22 109.8 291 29.6
PRCOL_00005302 Prasinoderma coloniale HOM05D007470 ORTHO05D009337 1.6e-19 101.3 247 29.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.5e-09 68.2 131 33.6
Potri.002G212701 Populus trichocarpa HOM05D005982 ORTHO05D007891 3.3e-09 67.0 134 32.1
AagrBONN_evm.TU.Sc2ySwM_228.77 Anthoceros agrestis HOM05D000068 ORTHO05D011688 4.4e-09 66.6 172 32.0
Lj7A611G40 Lonicera japonica HOM05D007470 ORTHO05D009337 5.7e-09 66.2 53 64.2
Manes.09G184400 Manihot esculenta HOM05D005982 ORTHO05D007891 7.4e-09 65.9 134 32.1
Nn4g26684 Nelumbo nucifera HOM05D005982 ORTHO05D007891 1.3e-08 65.1 134 31.3
Cre06.g273750 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D011688 1.7e-08 64.7 131 35.9
Haze_27001 Corylus avellana HOM05D000068 ORTHO05D011688 2.8e-08 63.9 135 37.0
Manes.08G104700 Manihot esculenta HOM05D005982 ORTHO05D007891 2.8e-08 63.9 134 30.6
Medtr1567s0010 Medicago truncatula HOM05D000068 ORTHO05D011688 6.3e-08 62.8 137 32.8
RcHm_v2.0_Chr3g0448111 Rosa chinensis HOM05D005982 ORTHO05D007891 6.3e-08 62.8 134 30.6
Hund07330 Selenicereus undatus HOM05D005982 ORTHO05D007891 6.3e-08 62.8 134 29.9
Thecc.05G201800 Theobroma cacao HOM05D005982 ORTHO05D007891 6.3e-08 62.8 140 34.3
Potri.014G137000 Populus trichocarpa HOM05D005982 ORTHO05D007891 8.2e-08 62.4 134 30.6
Sabra14G0103400 Salix brachista HOM05D005982 ORTHO05D007891 8.2e-08 62.4 134 30.6
Prupe.6G359900 Prunus persica HOM05D005982 ORTHO05D007891 1.4e-07 61.6 134 29.9
ATR0088G040 Amborella trichopoda HOM05D007470 ORTHO05D009337 1.8e-07 61.2 45 62.2
FvH4_6g00670 Fragaria vesca HOM05D005982 ORTHO05D007891 1.8e-07 61.2 134 30.6
FAN09G4525 Fragaria x ananassa HOM05D005982 ORTHO05D007891 1.8e-07 61.2 134 30.6
FAN14G5963 Fragaria x ananassa HOM05D005982 ORTHO05D007891 1.8e-07 61.2 134 30.6
Medtr7g079540 Medicago truncatula HOM05D005982 ORTHO05D007891 1.8e-07 61.2 134 29.9
Pp3s32_180 Physcomitrium patens HOM05D016182 ORTHO05D312539 1.8e-07 61.2 131 32.1
Dinv04347 Davidia involucrata HOM05D005982 ORTHO05D007891 2.4e-07 60.8 134 29.9
FAN05G0974 Fragaria x ananassa HOM05D005982 ORTHO05D007891 2.4e-07 60.8 134 30.6
Phvul.008G055500 Phaseolus vulgaris HOM05D005982 ORTHO05D007891 2.4e-07 60.8 134 32.1
Ca_07966_v3 Cicer arietinum L. HOM05D005982 ORTHO05D007891 3.1e-07 60.5 134 29.9
Ciclev10012081m.g Citrus clementina HOM05D005982 ORTHO05D007891 3.1e-07 60.5 134 29.9
Lalb_Chr19g0126741 Lupinus albus HOM05D005982 ORTHO05D007891 3.1e-07 60.5 134 29.1
MD12G1259300 Malus domestica HOM05D005982 ORTHO05D007891 3.1e-07 60.5 134 29.9
PGR031G2177 Punica granatum HOM05D005982 ORTHO05D007891 3.1e-07 60.5 134 29.9
Glyma.09G251900 Glycine max HOM05D005982 ORTHO05D007891 4.1e-07 60.1 134 29.1
Lalb_Chr03g0038371 Lupinus albus HOM05D005982 ORTHO05D007891 4.1e-07 60.1 134 29.1
TPR.G22240 Trifolium pratense HOM05D001012 ORTHO05D004721 4.1e-07 60.1 61 52.5
DCAR_001501 Daucus carota HOM05D005982 ORTHO05D007891 5.3e-07 59.7 134 29.9
Lj4g0027391 Lotus japonicus HOM05D000068 ORTHO05D007185 5.3e-07 59.7 163 30.1
TWI75G0896 Tripterygium wilfordii HOM05D005982 ORTHO05D007891 5.3e-07 59.7 140 32.9
ATR0824G061 Amborella trichopoda HOM05D005982 ORTHO05D007891 7.0e-07 59.3 134 29.9
Sed0000119 Sechium edule HOM05D005982 ORTHO05D007891 7.0e-07 59.3 134 29.1
VMungo1383G2145 Vigna mungo HOM05D005982 ORTHO05D007891 7.0e-07 59.3 134 29.9
CSS0009322 Camellia sinensis var. sinensis HOM05D005982 ORTHO05D007891 9.1e-07 58.9 134 29.9
Haze_27332 Corylus avellana HOM05D000068 ORTHO05D011688 9.1e-07 58.9 146 27.4
TPR.G28447 Trifolium pratense HOM05D005982 ORTHO05D007891 9.1e-07 58.9 134 29.1
GSVIVG01029255001 Vitis vinifera HOM05D000068 ORTHO05D007185 9.1e-07 58.9 166 31.3
ClCG03G010900 Citrullus lanatus HOM05D005982 ORTHO05D007891 1.2e-06 58.5 134 29.9
MELO3C010074.2 Cucumis melo HOM05D005982 ORTHO05D007891 1.2e-06 58.5 134 29.9
CsaV3_1G044650 Cucumis sativus L. HOM05D005982 ORTHO05D007891 1.2e-06 58.5 134 29.9
Os03g0670100 Oryza sativa ssp. japonica HOM05D005982 ORTHO05D007891 1.2e-06 58.5 134 29.1
SalBow6G2130 Salvia bowleyana HOM05D005982 ORTHO05D007891 1.2e-06 58.5 134 29.1
MSTRG.8220 Avicennia marina HOM05D005982 ORTHO05D007891 1.6e-06 58.2 134 29.9
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.6e-06 58.2 131 32.1
Psat3g104760 Pisum sativum HOM05D005982 ORTHO05D007891 1.6e-06 58.2 221 26.7
COL.COLO4_27407 Corchorus olitorius HOM05D005982 ORTHO05D007891 2.0e-06 57.8 134 29.9
Mapoly0149s0025 Marchantia polymorpha HOM05D005982 ORTHO05D007891 2.0e-06 57.8 186 29.0
Atru.chr12.2111 Acer truncatum HOM05D005982 ORTHO05D007891 2.6e-06 57.4 134 28.4
ATR0580G070 Amborella trichopoda HOM05D000068 ORTHO05D007185 2.6e-06 57.4 167 29.9
Ca_27427_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004691 2.6e-06 57.4 163 27.0
CiPaw.04G082400 Carya illinoinensis HOM05D000068 ORTHO05D008806 3.5e-06 57.0 207 27.5
Ca_29314_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 3.5e-06 57.0 137 29.9
TAR628G1100 Trochodendron aralioides HOM05D000068 ORTHO05D008806 3.5e-06 57.0 123 32.5
Ah.04g164430 Amaranthus hybridus HOM05D002172 ORTHO05D007185 4.5e-06 56.6 182 28.0
Rhsim10G0134600 Rhododendron simsii HOM05D000068 ORTHO05D008806 4.5e-06 56.6 215 28.4
Cpa.g.sc123.7 Carica papaya HOM05D005982 ORTHO05D007891 5.9e-06 56.2 134 29.1
Dinv24362 Davidia involucrata HOM05D000068 ORTHO05D008806 5.9e-06 56.2 123 31.7
EL10Ac6g15308 Beta vulgaris HOM05D000068 ORTHO05D008806 7.7e-06 55.8 122 30.3
BcaC09g52159 Brassica carinata HOM05D000068 ORTHO05D008806 7.7e-06 55.8 214 27.1
Lj1g0016626 Lotus japonicus HOM05D005982 ORTHO05D007891 7.7e-06 55.8 221 25.8
Lj1g0020952 Lotus japonicus HOM05D000068 ORTHO05D008806 7.7e-06 55.8 123 31.7


User provided reference genes

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