Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.6e-155 551.2 285 100.0
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.9e-138 495.0 285 89.5
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 7.0e-127 457.6 265 88.7
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.4e-119 432.6 284 81.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 2.7e-110 402.5 284 70.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.7e-110 402.5 243 85.6
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 7.8e-110 401.0 281 70.8
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 7.8e-110 401.0 281 71.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.3e-109 400.2 281 70.5
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.3e-108 395.6 281 73.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.3e-108 395.2 281 70.8
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.6e-107 393.3 283 69.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.1e-107 392.9 282 68.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.1e-107 391.3 281 69.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 6.1e-107 391.3 282 70.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-106 390.6 281 70.1
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.0e-106 390.6 281 71.9
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.4e-106 390.2 282 70.6
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.4e-106 390.2 281 69.8
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.0e-106 389.0 282 69.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.4e-105 385.6 285 69.1
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.4e-105 385.2 281 69.0
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 4.4e-105 385.2 282 69.5
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.7e-104 383.3 284 65.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.9e-104 382.5 282 69.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.4e-103 380.2 281 68.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.4e-103 380.2 280 69.3
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.4e-103 378.3 287 68.3
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 7.0e-103 377.9 277 69.0
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 7.0e-103 377.9 281 68.0
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 9.2e-103 377.5 281 66.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.0e-102 376.3 281 66.5
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.5e-102 375.6 282 69.1
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 3.5e-102 375.6 281 66.5
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.0e-101 374.0 281 67.6
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.3e-101 373.6 286 67.1
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-101 373.6 292 66.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.3e-101 373.6 281 66.2
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 6.6e-101 371.3 281 65.8
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 8.6e-101 370.9 284 66.2
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.1e-100 370.5 284 64.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.1e-100 370.5 283 64.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.5e-100 370.2 273 69.2
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-100 369.8 283 64.7
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.5e-100 369.4 283 65.7
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.5e-100 369.4 259 71.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.5e-100 369.4 287 66.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.3e-100 369.0 292 65.4
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.3e-100 369.0 284 64.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.3e-100 368.6 284 65.5
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 9.5e-100 367.5 284 65.8
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.6e-99 366.7 281 66.2
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.6e-99 365.5 284 64.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.7e-99 365.2 280 65.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 4.7e-99 365.2 273 68.5
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 8.0e-99 364.4 280 66.8
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.1e-98 364.0 283 64.7
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.1e-98 362.5 282 65.6
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.1e-98 362.5 283 64.3
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.6e-97 359.4 284 63.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.4e-97 359.0 282 64.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 5.8e-97 358.2 285 64.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 9.8e-97 357.5 283 62.9
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 279 63.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.7e-96 355.5 280 66.4
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.4e-95 352.8 285 64.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.4e-95 352.8 285 64.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.4e-95 352.8 285 64.2
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.4e-95 352.8 285 64.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.2e-95 352.4 277 65.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 7.0e-95 351.3 285 66.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 7.0e-95 351.3 282 65.2
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 9.2e-95 350.9 289 65.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-94 350.5 277 65.3
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 277 65.3
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.2e-94 350.5 277 65.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.6e-94 350.1 286 64.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.5e-94 349.0 284 64.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.5e-94 349.0 286 64.7
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 4.6e-94 348.6 286 64.0
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.6e-94 348.6 286 64.0
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 7.8e-94 347.8 244 71.7
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.7e-93 346.7 277 67.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.7e-93 346.7 286 66.1
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.7e-93 346.7 281 64.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.3e-93 346.3 229 73.8
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.3e-93 346.3 284 63.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.5e-92 343.6 286 64.0
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.5e-92 343.6 285 62.5
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.9e-92 343.2 278 63.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.3e-92 342.0 286 62.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 5.6e-92 341.7 230 73.5
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 5.6e-92 341.7 229 72.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 7.3e-92 341.3 284 63.4
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 9.5e-92 340.9 316 58.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 4.7e-91 338.6 279 65.2
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 4.7e-91 338.6 277 62.1
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 6.2e-91 338.2 229 71.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.3e-90 336.3 292 61.3
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.2e-89 334.0 284 62.3
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.9e-88 329.3 244 68.9
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.4e-87 327.0 284 60.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.9e-87 326.6 288 60.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.1e-87 325.5 284 59.9
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.6e-86 323.6 216 72.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 4.6e-86 322.0 279 61.6
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.1e-84 317.4 275 61.1
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.9e-84 316.6 252 64.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.3e-84 315.5 237 67.5
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 5.6e-84 315.1 278 59.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.1e-82 310.8 283 58.0
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.8e-82 310.1 290 57.6
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 2.6e-81 306.2 229 66.4
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 6.4e-80 301.6 211 72.5
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.1e-78 296.6 236 62.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 7.8e-78 294.7 229 63.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-76 290.8 229 62.4
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.6e-76 288.5 229 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 4.7e-75 285.4 292 52.4
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.2e-70 270.8 232 57.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 7.8e-70 268.1 289 48.4
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.0e-69 267.7 273 51.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-60 237.3 210 61.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.4e-58 229.9 153 71.2
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.4e-55 220.7 139 75.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-53 214.5 197 50.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.0e-53 214.5 197 50.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-52 211.1 197 49.7
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-52 209.9 197 49.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-51 207.2 211 56.9
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.1e-51 206.8 265 45.3
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-50 203.0 224 53.6
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.5e-49 200.7 135 74.1
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.7e-46 189.9 258 46.1
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.6e-41 173.3 178 55.1
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.9e-41 172.2 197 43.1
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-40 168.7 180 48.3
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 5.7e-28 129.0 83 78.3
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.4e-28 128.6 119 58.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-27 127.9 193 37.3
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-27 127.5 206 42.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.1e-26 124.8 76 78.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.6e-25 120.2 99 62.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.6e-25 120.2 99 62.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.5e-25 119.4 220 39.5
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 1.1e-23 114.8 218 33.0
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-23 113.6 205 32.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.2e-22 111.3 193 37.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-17 94.4 59 78.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.5e-17 92.8 62 72.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.9e-17 92.4 57 77.2
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.8e-16 89.7 62 71.0
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.1e-14 82.4 63 68.3
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.5e-12 77.8 91 44.0
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.7e-12 75.9 58 65.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.3e-11 74.7 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 2.5e-07 60.5 92 39.1
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 9.4e-07 58.5 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 9.4e-07 58.5 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 6.1e-06 55.8 61 49.2


User provided reference genes

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