Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.2e-191 671.0 371 100.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-126 457.2 368 69.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.3e-122 443.0 481 57.4
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-50 203.8 369 39.0
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.3e-50 202.6 369 39.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.9e-49 198.4 367 39.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 5.5e-47 192.6 378 40.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.6e-46 191.0 368 38.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-45 188.0 369 36.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.0e-45 186.8 397 37.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.9e-45 186.4 367 37.9
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-44 184.9 367 37.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.1e-44 184.9 408 38.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.3e-44 183.3 366 39.9
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.3e-43 181.4 374 37.4
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.6e-43 181.0 375 36.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.7e-43 179.9 370 37.6
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.7e-43 179.9 376 38.0
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.7e-43 179.9 376 38.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.1e-42 178.3 376 37.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.8e-42 177.6 370 37.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.4e-42 177.2 385 41.0
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.1e-42 176.8 379 36.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.3e-42 176.0 387 37.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.9e-42 175.6 376 37.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.2e-41 174.9 368 34.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.4e-41 173.3 368 35.9
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.0e-40 171.8 377 37.7
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-40 171.4 383 35.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.9e-40 170.2 378 36.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.8e-40 169.9 375 40.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.9e-39 167.5 383 40.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.5e-39 167.2 377 34.5
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.2e-39 166.8 381 33.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.2e-39 166.4 366 37.2
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.5e-39 166.0 372 36.3
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.2e-38 164.9 366 40.7
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.6e-38 162.9 371 35.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 6.0e-38 162.5 382 35.1
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.9e-37 159.8 369 34.4
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 5.1e-37 159.5 390 38.2
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.5e-36 157.1 371 36.1
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 3.3e-36 156.8 377 34.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.7e-36 156.0 368 39.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 7.4e-36 155.6 371 35.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.4e-36 155.6 371 36.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.3e-35 152.5 371 35.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 6.3e-35 152.5 140 57.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 8.2e-35 152.1 382 35.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.1e-34 151.8 372 35.8
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.8e-34 151.0 397 31.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.4e-34 150.6 374 35.6
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.0e-34 148.7 387 32.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.5e-33 147.9 369 38.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.0e-33 147.5 374 34.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.0e-32 145.2 139 54.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.3e-32 144.8 122 59.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.8e-32 143.3 153 52.3
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-31 141.0 154 46.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.5e-31 140.6 154 46.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.2e-31 139.8 380 33.2
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.5e-31 139.4 122 55.7
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.2e-31 139.0 170 48.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.3e-31 138.7 384 33.9
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.6e-30 137.9 375 32.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.6e-30 136.3 425 33.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 4.6e-30 136.3 420 31.4
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.9e-30 135.6 161 46.0
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.0e-29 135.2 102 59.8
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 6.7e-29 132.5 167 46.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 8.7e-29 132.1 379 32.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.1e-28 131.7 166 42.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.5e-28 131.3 164 45.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-28 131.3 387 36.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.5e-28 130.6 384 37.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.3e-28 130.2 103 58.3
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.3e-28 129.8 297 32.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.7e-28 129.4 141 46.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.7e-28 128.6 125 47.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.3e-27 128.3 371 32.1
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.6e-27 127.9 162 50.0
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.6e-27 127.9 164 41.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.6e-27 127.9 371 31.8
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.2e-27 127.5 158 47.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.2e-27 127.5 124 55.6
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.8e-27 127.1 376 29.3
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.8e-27 127.1 161 47.8
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.8e-27 127.1 222 38.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.7e-27 126.7 178 44.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 4.8e-27 126.3 167 43.7
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 8.2e-27 125.6 163 45.4
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-26 124.4 133 48.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.8e-26 124.4 101 61.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.8e-26 124.4 101 61.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-26 124.0 153 46.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-26 123.6 162 46.3
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.1e-26 123.6 162 46.3
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.1e-26 123.2 152 46.1
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 9.1e-26 122.1 162 46.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 9.1e-26 122.1 162 46.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.0e-25 120.9 156 45.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.6e-25 120.6 112 53.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.6e-25 120.6 371 31.3
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.4e-25 120.2 144 48.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.5e-25 119.8 366 33.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 7.7e-25 119.0 102 52.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-24 117.9 324 34.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.9e-24 117.1 167 41.3
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.8e-24 116.7 326 33.4
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.8e-24 116.7 326 33.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.8e-24 116.7 164 42.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.0e-24 116.3 273 32.2
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.0e-24 116.3 385 33.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 6.5e-24 115.9 126 49.2
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.5e-24 115.9 177 39.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.5e-24 115.9 185 39.5
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.5e-24 115.5 136 42.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-23 114.4 127 48.0
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.5e-23 114.0 111 49.5
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.2e-23 113.6 187 39.0
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.2e-23 113.2 187 39.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.2e-23 113.2 140 43.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.5e-23 112.8 107 56.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-22 111.7 139 46.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.6e-22 111.3 107 50.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.6e-22 111.3 124 52.4
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.1e-22 110.9 359 30.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.7e-22 110.5 164 43.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.7e-22 110.5 164 43.9
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.7e-22 110.5 375 27.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.6e-22 109.8 108 47.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 7.9e-22 109.0 92 53.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.0e-21 108.6 167 42.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-21 108.2 136 44.9
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-21 108.2 136 44.9
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-21 108.2 136 44.9
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-21 107.8 128 47.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.8e-21 107.8 156 46.8
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.8e-21 107.8 125 50.4
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-21 107.5 128 47.7
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-21 107.5 128 47.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-21 107.5 166 40.4
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-21 107.5 168 42.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.0e-21 107.1 104 51.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.0e-21 107.1 98 58.2
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.0e-21 107.1 98 58.2
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 3.0e-21 107.1 171 44.4
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.0e-21 107.1 123 48.0
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.9e-21 106.7 124 50.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-20 104.0 164 42.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.7e-20 102.8 130 45.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.3e-19 101.7 120 41.7
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.7e-19 101.3 101 53.5
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.7e-19 101.3 153 34.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.2e-19 100.9 166 42.2
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-17 95.1 73 63.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.5e-17 94.7 169 39.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.6e-17 94.0 111 49.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.0e-16 92.0 73 61.6
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.2e-16 90.9 365 29.3
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.7e-14 84.0 167 32.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.7e-14 84.0 140 34.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.9e-14 82.4 119 39.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.7e-13 79.3 128 37.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 8.8e-13 79.0 119 34.5
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.2e-11 72.4 107 38.3
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.1e-10 70.5 158 36.7
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.9e-07 61.2 99 36.4
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.6e-06 58.2 43 65.1
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.7e-06 57.4 71 42.3
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.7e-06 57.4 71 42.3
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.1e-06 56.2 107 33.6


User provided reference genes

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