Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 5.7e-253 877.1 442 100.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.5e-205 719.5 427 85.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 3.7e-135 485.7 388 61.6
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.4e-134 483.0 431 59.4
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.2e-133 480.7 430 57.2
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 3.5e-133 479.2 390 60.3
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.0e-132 477.6 387 62.5
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.3e-132 476.5 427 58.3
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.9e-132 476.1 441 57.1
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 5.5e-131 471.9 425 58.1
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.2e-130 470.7 395 59.5
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 6.1e-130 468.4 387 60.2
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 8.0e-130 468.0 437 55.8
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 5.2e-129 465.3 427 55.0
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 8.9e-129 464.5 445 54.8
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 5.7e-128 461.8 450 55.1
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 9.8e-128 461.1 430 55.3
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.8e-127 459.5 430 55.3
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 6.3e-127 458.4 386 59.6
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.1e-126 457.6 392 57.1
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.8e-126 456.8 384 59.9
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.8e-126 456.8 394 56.9
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.2e-126 456.1 392 58.7
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 3.2e-126 456.1 429 54.1
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 7.0e-126 454.9 427 55.5
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 7.0e-126 454.9 388 59.0
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.0e-125 453.4 443 54.9
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.5e-125 452.6 384 58.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.5e-125 452.6 444 52.9
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 3.5e-125 452.6 387 58.4
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 4.5e-125 452.2 435 53.8
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 5.9e-125 451.8 391 56.8
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.8e-125 451.4 390 57.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 7.8e-125 451.4 392 56.6
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.0e-124 451.1 388 58.5
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.7e-124 450.3 391 56.5
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.3e-124 449.9 389 57.8
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 3.9e-124 449.1 388 58.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.6e-124 448.4 433 55.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 6.6e-124 448.4 388 57.2
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 6.6e-124 448.4 432 54.9
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 6.6e-124 448.4 395 57.0
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 8.6e-124 448.0 389 57.6
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.1e-123 447.6 410 58.5
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.5e-123 447.2 434 53.0
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.5e-123 447.2 391 58.3
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.9e-123 446.8 392 57.1
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.5e-123 446.4 439 52.8
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 3.3e-123 446.0 392 56.4
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.3e-123 446.0 389 57.8
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 7.3e-123 444.9 390 57.4
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-122 444.1 431 55.0
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-122 444.1 431 55.2
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 2.1e-122 443.4 383 57.7
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.1e-122 443.4 389 56.8
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 2.8e-122 443.0 433 53.3
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-121 441.0 411 53.8
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.4e-121 440.7 439 52.8
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.3e-121 439.9 405 55.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.1e-121 439.5 418 53.1
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 5.2e-121 438.7 388 55.9
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 8.9e-121 438.0 387 55.6
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 8.9e-121 438.0 397 55.2
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.3e-119 434.1 420 53.8
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 8.3e-119 431.4 417 54.7
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.4e-118 430.6 392 55.4
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 9.2e-118 427.9 427 51.5
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.6e-117 427.2 431 53.4
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.7e-117 426.4 388 55.7
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 6.0e-117 425.2 432 51.4
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.0e-116 424.5 386 55.2
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.0e-116 424.5 433 53.6
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.3e-116 424.1 435 53.3
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.6e-116 421.8 431 53.8
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 8.6e-116 421.4 365 58.1
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.9e-115 420.2 420 51.7
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 5.6e-115 418.7 415 53.0
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.2e-114 417.5 430 51.6
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.6e-114 417.2 436 50.7
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.1e-114 416.8 427 50.1
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.8e-114 416.4 388 54.9
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 4.7e-114 415.6 408 51.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.1e-113 414.5 382 53.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 4.0e-113 412.5 379 53.3
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 8.9e-113 411.4 379 52.8
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-112 410.2 382 52.9
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.6e-112 409.8 381 52.2
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.4e-112 409.5 396 54.0
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.4e-112 409.5 396 54.0
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 5.8e-112 408.7 380 52.1
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 1.3e-111 407.5 408 54.2
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 6.4e-111 405.2 380 51.6
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 6.4e-111 405.2 373 55.8
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.4e-110 404.1 363 55.4
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.4e-110 404.1 381 54.1
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 5.4e-110 402.1 381 51.4
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.6e-109 400.6 384 53.6
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.7e-109 399.8 385 50.4
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.1e-106 388.3 361 53.5
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 8.3e-103 378.3 362 52.2
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 9.2e-102 374.8 414 47.1
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.2e-101 374.4 344 54.4
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 4.3e-99 365.9 341 52.8
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.1e-98 363.6 312 58.0
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 3.3e-91 339.7 374 45.7
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.1e-90 337.0 259 63.3
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 6.9e-89 332.0 416 44.2
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.2e-88 331.3 254 63.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 9.9e-88 328.2 364 47.3
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 6.4e-87 325.5 350 47.4
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.6e-85 319.3 362 47.8
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 7.9e-85 318.5 351 47.3
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.3e-84 317.0 372 42.2
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-81 308.1 364 45.3
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.2e-79 300.4 238 69.7
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.6e-77 294.3 381 42.8
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 7.9e-77 292.0 344 44.8
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-76 291.6 281 50.5
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 4.8e-74 282.7 225 59.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.0e-68 263.5 376 41.2
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 7.4e-67 258.8 223 56.5
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 1.1e-65 255.0 384 44.5
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.4e-64 250.0 211 59.7
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.5e-54 217.2 307 44.0
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 6.7e-44 182.6 356 36.0
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.1e-41 173.3 193 48.2
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 1.5e-40 171.4 173 48.6
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 6.1e-37 159.5 116 68.1
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.4e-36 158.3 112 67.9
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-32 145.2 193 43.5
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.6e-32 144.8 117 59.8
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 2.1e-29 134.4 122 50.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-28 132.1 111 57.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 2.0e-27 127.9 128 50.0
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 9.8e-27 125.6 247 32.8
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 4.8e-26 123.2 115 48.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-25 122.1 115 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 7.0e-25 119.4 208 37.5
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 2.9e-23 114.0 105 49.5
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.2e-21 108.6 173 38.2
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.6e-19 100.9 73 67.1
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 3.1e-17 94.0 258 29.5
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 5.9e-16 89.7 122 41.0
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.8e-15 87.0 244 28.7
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.5e-14 82.4 65 63.1
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 1.2e-13 82.0 102 42.2
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.6e-13 81.6 73 58.9
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 2.3e-12 77.8 109 39.4
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 6.8e-12 76.3 86 43.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 6.8e-12 76.3 86 43.0
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 8.9e-12 75.9 84 45.2
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 8.9e-12 75.9 90 44.4
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.5e-11 75.1 327 26.0
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 2.0e-11 74.7 140 38.6
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 2.6e-11 74.3 89 49.4
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.7e-10 71.6 52 59.6
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.9e-10 70.9 66 54.5
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 1.1e-09 68.9 52 67.3
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 7.0e-09 66.2 246 25.6
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 3.5e-08 63.9 115 35.7
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 4.6e-08 63.5 352 21.6
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 5.9e-08 63.2 246 25.6
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 7.8e-08 62.8 258 25.6
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 7.8e-08 62.8 245 24.1
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 1.0e-07 62.4 245 24.1
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 3.9e-07 60.5 73 41.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 3.9e-07 60.5 73 41.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 3.9e-07 60.5 73 41.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 3.9e-07 60.5 73 41.1
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 2.5e-06 57.8 73 41.1
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.5e-06 57.8 246 24.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 4.3e-06 57.0 50 50.0
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 7.3e-06 56.2 144 25.0


User provided reference genes

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