Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 1.1e-130 469.9 238 100.0
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 3.1e-104 382.1 241 83.0
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 6.9e-104 380.9 241 82.2
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 2.7e-100 369.0 242 81.0
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 1.8e-75 286.6 241 64.7
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 1.5e-74 283.5 241 63.5
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 1.3e-73 280.4 246 61.8
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 1.7e-73 280.0 241 62.7
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 6.8e-67 258.1 241 58.5
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 8.9e-67 257.7 242 59.1
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 1.3e-65 253.8 243 56.8
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 2.8e-65 252.7 241 58.1
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 6.3e-65 251.5 268 53.7
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 1.4e-64 250.4 241 58.9
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.4e-64 249.6 241 57.3
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 7.0e-64 248.1 241 56.8
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.2e-63 247.3 244 55.7
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 1.6e-63 246.9 241 57.3
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 2.0e-63 246.5 244 55.7
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 7.8e-63 244.6 241 56.4
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 1.3e-62 243.8 247 53.8
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.3e-62 243.0 241 55.6
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 3.8e-62 242.3 242 54.5
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 6.6e-62 241.5 241 55.6
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 1.1e-61 240.7 244 54.9
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.5e-61 239.6 241 54.8
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 4.3e-61 238.8 241 53.9
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 4.3e-61 238.8 241 57.7
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 8.0e-60 234.6 244 56.6
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 8.9e-59 231.1 237 55.3
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 2.6e-58 229.6 243 52.7
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 7.5e-58 228.0 246 51.6
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 8.3e-57 224.6 243 51.9
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 8.3e-57 224.6 260 50.0
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 3.2e-56 222.6 242 52.5
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 5.4e-56 221.9 242 52.5
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 5.4e-56 221.9 240 52.5
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 9.2e-56 221.1 260 49.6
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 2.7e-55 219.5 257 48.6
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 4.6e-55 218.8 242 51.7
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 7.8e-55 218.0 241 52.7
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 1.0e-54 217.6 238 50.8
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 2.3e-54 216.5 241 50.6
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 3.9e-54 215.7 225 54.7
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 1.5e-53 213.8 257 48.6
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 5.6e-53 211.8 228 52.6
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 6.2e-52 208.4 262 48.1
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 1.4e-51 207.2 240 49.2
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 8.9e-51 204.5 250 48.8
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 8.9e-51 204.5 164 62.2
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.2e-50 204.1 242 48.3
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 4.4e-50 202.2 203 54.2
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 9.8e-50 201.1 259 44.8
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 3.7e-49 199.1 257 45.9
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 4.9e-49 198.7 225 49.8
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 8.3e-49 198.0 242 47.5
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 1.4e-48 197.2 237 50.2
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 3.2e-48 196.1 241 49.4
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 9.2e-48 194.5 248 44.0
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 9.2e-48 194.5 252 46.4
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 9.2e-48 194.5 260 45.4
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.1e-47 193.4 231 48.9
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 2.1e-47 193.4 231 48.9
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 3.5e-47 192.6 241 49.0
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 6.0e-47 191.8 228 49.6
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 6.0e-47 191.8 225 48.9
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 7.8e-47 191.4 237 48.5
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 2.3e-46 189.9 241 46.5
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 2.3e-46 189.9 228 47.8
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 2.3e-46 189.9 243 46.9
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 2.3e-46 189.9 228 45.6
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 6.6e-46 188.3 242 47.5
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 8.6e-46 188.0 241 46.5
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.5e-45 187.2 226 48.2
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 1.9e-45 186.8 236 46.6
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 2.5e-45 186.4 259 44.4
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 2.5e-45 186.4 241 46.5
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.3e-45 186.0 231 47.2
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 4.3e-45 185.7 194 51.5
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 7.3e-45 184.9 221 51.1
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 9.5e-45 184.5 231 46.8
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 9.5e-45 184.5 231 46.8
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 9.5e-45 184.5 231 46.8
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 1.6e-44 183.7 236 45.3
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 2.1e-44 183.3 231 46.8
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 2.1e-44 183.3 241 46.1
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 6.2e-44 181.8 231 46.3
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.1e-43 181.0 252 41.7
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 1.1e-43 181.0 225 47.1
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 1.1e-43 181.0 221 50.2
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 1.4e-43 180.6 242 43.8
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 2.3e-43 179.9 242 45.9
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 2.3e-43 179.9 242 45.9
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 8.9e-43 177.9 242 45.5
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 8.9e-43 177.9 242 45.5
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 8.9e-43 177.9 242 45.5
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 1.2e-42 177.6 225 44.0
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 2.0e-42 176.8 242 45.0
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.4e-42 176.0 242 45.0
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.4e-42 176.0 242 45.0
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 1.7e-41 173.7 241 44.0
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 2.2e-41 173.3 238 45.0
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.4e-40 170.6 225 47.6
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 5.4e-40 168.7 235 44.3
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 9.2e-40 167.9 241 44.0
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 3.5e-39 166.0 224 46.0
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 3.5e-39 166.0 158 51.9
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 1.9e-37 160.2 164 52.4
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 3.6e-36 156.0 243 41.2
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 4.7e-36 155.6 250 39.2
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 1.8e-35 153.7 222 41.0
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 2.1e-31 140.2 244 39.3
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 6.6e-30 135.2 228 38.6
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 1.1e-27 127.9 94 67.0
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 1.9e-24 117.1 99 58.6
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 9.3e-24 114.8 92 62.0
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 1.6e-23 114.0 223 37.7
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 2.1e-23 113.6 147 46.9
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 1.7e-22 110.5 92 59.8
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 1.6e-20 104.0 249 32.5
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 1.4e-19 100.9 149 38.9
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 3.2e-16 89.7 182 34.1
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 9.3e-16 88.2 213 32.4
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 1.8e-14 84.0 123 41.5
Cpa.g.sc18.189 Carica papaya HOM05D004825 ORTHO05D005415 1.5e-13 80.9 118 43.2
Nitab4.5_0000188g0370 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.1e-11 74.7 130 36.9
EL10Ac6g14361 Beta vulgaris HOM05D004825 ORTHO05D005415 3.5e-07 59.7 51 54.9


User provided reference genes

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