Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 2.4e-156 555.4 275 100.0
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 2.0e-131 472.6 250 93.6
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 5.0e-130 468.0 250 93.2
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 2.4e-124 449.1 250 88.4
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 2.8e-104 382.5 250 74.8
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.2e-102 377.1 255 73.7
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 9.8e-102 374.0 252 73.0
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 1.8e-100 369.8 250 73.6
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.8e-100 369.8 238 76.1
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.8e-100 369.8 251 72.5
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 3.2e-100 369.0 252 71.8
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 4.1e-100 368.6 245 75.1
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 5.4e-100 368.2 248 74.2
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 9.2e-100 367.5 248 74.2
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 3.5e-99 365.5 244 73.4
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 7.8e-99 364.4 243 74.5
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.0e-98 364.0 287 67.2
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.0e-98 364.0 241 73.4
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 1.3e-98 363.6 263 70.3
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 2.9e-98 362.5 251 72.5
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 2.5e-97 359.4 245 72.7
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 3.3e-97 359.0 251 72.9
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 3.3e-97 359.0 241 73.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 3.3e-97 359.0 251 70.9
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 5.6e-97 358.2 255 71.0
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 9.5e-97 357.5 246 72.0
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 2.1e-96 356.3 236 73.3
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 4.7e-96 355.1 238 72.3
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 1.8e-95 353.2 253 70.0
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 2.3e-95 352.8 256 68.0
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.1e-95 352.4 234 74.4
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 5.2e-95 351.7 239 73.2
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.2e-95 351.7 256 67.6
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 4.4e-94 348.6 255 70.2
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 2.9e-93 345.9 255 68.6
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 3.7e-93 345.5 257 67.7
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 4.9e-93 345.1 249 69.1
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 4.9e-93 345.1 253 69.2
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 8.3e-93 344.4 243 70.8
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 8.3e-93 344.4 247 68.0
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 1.4e-92 343.6 231 73.2
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 2.4e-92 342.8 256 69.1
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 3.2e-92 342.4 237 70.0
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 3.2e-92 342.4 237 70.5
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 4.1e-92 342.0 254 66.5
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 5.4e-92 341.7 226 74.3
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.2e-91 340.5 237 70.5
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.2e-91 340.5 305 59.7
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.2e-91 340.5 255 68.2
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.6e-91 340.1 255 68.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 4.6e-91 338.6 256 69.1
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.0e-90 337.4 250 68.4
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 3.0e-90 335.9 240 70.8
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 3.9e-90 335.5 232 71.6
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 5.0e-90 335.1 278 62.9
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 8.6e-90 334.3 256 68.4
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 2.5e-89 332.8 258 65.5
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 2.5e-89 332.8 254 66.5
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 2.5e-89 332.8 245 69.4
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 9.5e-89 330.9 254 65.4
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 9.5e-89 330.9 257 65.8
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.2e-88 330.5 257 65.4
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.2e-88 330.5 252 65.5
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.6e-88 330.1 254 65.7
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.6e-88 330.1 250 67.2
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.6e-88 330.1 250 67.2
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 2.1e-88 329.7 233 71.2
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.7e-88 328.6 278 62.2
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.2e-88 328.2 254 65.4
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 6.2e-88 328.2 254 65.4
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.1e-87 327.4 251 65.7
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.1e-87 327.4 242 68.2
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.4e-87 327.0 249 67.1
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 3.1e-87 325.9 258 64.7
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 3.1e-87 325.9 277 61.7
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 6.8e-87 324.7 257 65.0
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 8.9e-87 324.3 239 68.2
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 8.9e-87 324.3 241 68.0
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.5e-86 323.6 239 66.1
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 3.4e-86 322.4 219 72.6
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.5e-86 321.2 277 61.0
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.7e-85 320.1 235 67.2
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 3.2e-84 315.8 261 61.7
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 5.4e-84 315.1 270 60.4
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 3.5e-83 312.4 240 66.7
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 4.6e-83 312.0 235 67.2
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 3.3e-81 305.8 263 60.1
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 2.8e-80 302.8 237 65.4
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 5.2e-79 298.5 250 59.6
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 7.6e-78 294.7 240 59.6
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 4.1e-76 288.9 261 58.6
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 7.1e-76 288.1 284 53.2
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 3.5e-75 285.8 271 55.0
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 8.6e-74 281.2 189 73.5
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 8.1e-72 274.6 226 61.9
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 2.4e-71 273.1 243 59.3
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.5e-70 270.4 240 61.7
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 1.5e-65 253.8 180 70.6
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 4.5e-54 215.7 219 52.1
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.2e-53 213.4 256 46.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 7.9e-51 204.9 130 74.6
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.3e-50 203.4 257 43.6
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 1.5e-49 200.7 254 50.0
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 2.5e-49 199.9 253 50.2
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 1.4e-47 194.1 254 45.3
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 3.2e-44 183.0 172 52.3
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 1.0e-42 177.9 119 70.6
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 9.7e-33 144.8 120 57.5
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 2.4e-31 140.2 131 58.8
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.1e-31 139.4 151 55.0
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.2e-22 111.3 112 61.6
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 4.2e-20 102.8 112 50.9
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.0e-18 98.2 140 36.4
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.3e-09 66.6 56 60.7
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.2e-08 63.9 59 50.8
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.4e-07 60.5 52 51.9
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.4e-07 60.5 133 34.6
Actinidia36204 Actinidia chinensis HOM05D006878 ORTHO05D008579 5.3e-07 59.3 53 56.6


User provided reference genes

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