Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 6.5e-64 247.3 129 100.0
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 6.7e-53 210.7 129 86.8
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.1e-46 189.1 130 79.2
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 5.5e-31 137.9 118 62.7
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.2e-30 136.7 111 66.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.6e-30 136.3 122 63.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.6e-30 135.2 115 63.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 4.7e-30 134.8 94 74.5
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.1e-30 134.4 125 59.2
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.8e-29 132.9 125 60.0
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.3e-29 132.5 112 65.2
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 4.0e-29 131.7 121 61.2
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 5.2e-29 131.3 123 59.3
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 6.8e-29 131.0 111 64.0
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 8.8e-29 130.6 119 57.1
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.2e-28 130.2 123 61.0
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.5e-28 129.8 128 56.2
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-28 129.8 123 61.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.5e-28 129.8 125 60.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.5e-28 129.8 116 61.2
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-28 129.4 123 61.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-28 129.4 123 61.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-28 129.4 123 61.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 2.0e-28 129.4 113 61.9
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.4e-28 128.6 123 60.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.4e-28 128.3 123 61.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.7e-28 127.9 123 60.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.5e-28 127.5 123 60.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 7.5e-28 127.5 113 61.9
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.3e-27 126.7 117 59.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.7e-27 126.3 129 54.3
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-27 126.3 123 60.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.7e-27 126.3 125 56.0
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.8e-27 125.6 122 57.4
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 2.8e-27 125.6 120 56.7
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 3.7e-27 125.2 116 61.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 4.9e-27 124.8 123 56.1
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 4.9e-27 124.8 120 55.8
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 4.9e-27 124.8 123 55.3
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 6.3e-27 124.4 128 56.2
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 6.3e-27 124.4 125 56.0
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 8.3e-27 124.0 127 55.1
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.1e-26 123.6 117 54.7
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.4e-26 123.2 124 54.8
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.8e-26 122.9 114 55.3
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.8e-26 122.9 133 55.6
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-26 122.5 130 57.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.4e-26 122.5 110 59.1
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 4.1e-26 121.7 124 55.6
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.4e-26 121.3 110 59.1
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 5.4e-26 121.3 123 56.9
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 7.0e-26 120.9 131 54.2
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 7.0e-26 120.9 111 59.5
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 9.2e-26 120.6 144 51.4
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.0e-25 119.4 125 53.6
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.7e-25 119.0 123 58.5
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.5e-25 118.6 131 56.5
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.5e-25 118.2 123 58.5
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 4.5e-25 118.2 115 56.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 5.9e-25 117.9 113 56.6
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.9e-25 117.9 123 58.5
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 7.8e-25 117.5 110 59.1
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 7.8e-25 117.5 110 57.3
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-24 116.7 112 60.7
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.3e-24 116.7 116 57.8
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.8e-24 115.2 123 56.9
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 5.0e-24 114.8 117 53.8
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 6.6e-24 114.4 118 56.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 6.6e-24 114.4 114 56.1
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 8.6e-24 114.0 115 58.3
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.1e-23 113.6 111 57.7
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.9e-23 112.8 119 51.3
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 3.3e-23 112.1 110 55.5
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 3.3e-23 112.1 121 52.9
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.3e-23 111.7 109 57.8
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 5.6e-23 111.3 150 44.7
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 7.3e-23 110.9 109 56.9
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 7.3e-23 110.9 125 52.0
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 9.5e-23 110.5 119 51.3
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.8e-22 109.0 118 49.2
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.7e-22 108.2 136 49.3
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.0e-21 107.1 112 51.8
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.3e-21 105.9 118 48.3
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.0e-21 105.5 55 94.5
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 3.0e-21 105.5 116 52.6
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.0e-21 105.1 110 53.6
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 8.9e-21 104.0 109 54.1
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.0e-20 102.8 120 50.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 2.0e-20 102.8 117 53.8
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 5.7e-20 101.3 107 52.3
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 5.7e-20 101.3 119 47.9
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 9.8e-20 100.5 107 53.3
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.3e-19 100.1 112 50.9
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.3e-19 100.1 112 50.9
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.3e-19 100.1 111 50.5
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 2.2e-19 99.4 126 46.0
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.9e-19 99.0 110 50.0
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 6.4e-19 97.8 111 50.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 8.3e-19 97.4 107 51.4
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 8.3e-19 97.4 111 50.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 2.4e-18 95.9 120 46.7
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.4e-18 95.9 87 59.8
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.2e-18 95.5 108 52.8
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.5e-17 92.0 108 50.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.8e-17 90.9 112 50.9
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 7.8e-17 90.9 122 45.9
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.0e-16 90.5 107 47.7
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.9e-16 88.6 91 51.6
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 6.6e-16 87.8 109 50.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 6.6e-16 87.8 120 45.0
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 6.6e-16 87.8 85 60.0
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 6.6e-16 87.8 118 47.5
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.9e-15 86.3 207 32.4
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-15 86.3 79 59.5
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.3e-15 85.5 71 62.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 7.3e-15 84.3 70 58.6
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.6e-14 83.2 107 44.9
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.8e-13 79.7 117 41.9
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.8e-13 79.7 82 52.4
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.0e-13 78.6 67 61.2
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.8e-13 77.8 79 57.0
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 1.5e-12 76.6 80 50.0
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.9e-10 69.7 64 54.7
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 3.2e-10 68.9 69 56.5
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 5.4e-10 68.2 112 38.4
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.0e-09 66.2 57 63.2
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.7e-09 65.9 105 38.1
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 7.8e-09 64.3 102 41.2
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.0e-08 63.9 57 61.4
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.7e-08 63.2 74 47.3
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 3.0e-08 62.4 56 60.7
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 6.6e-08 61.2 60 50.0
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 9.5e-07 57.4 73 45.2
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.2e-06 57.0 73 45.2


User provided reference genes

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