Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.8e-151 539.3 278 100.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.3e-109 400.2 256 83.2
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.6e-104 383.3 278 74.1
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 6.9e-103 377.9 279 74.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.7e-85 320.1 181 92.8
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.9e-81 306.6 281 58.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.4e-79 300.4 281 56.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.8e-78 295.0 281 56.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.6e-78 294.7 281 57.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.3e-77 293.9 282 56.0
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.8e-77 292.4 283 56.2
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.9e-77 292.0 281 57.7
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.5e-77 291.6 273 59.7
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 5.5e-76 288.5 280 57.5
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 7.1e-76 288.1 280 55.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 4.6e-75 285.4 254 61.4
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.9e-75 284.6 271 57.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.3e-74 283.9 272 59.6
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.3e-74 283.9 282 56.0
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-74 283.5 280 56.8
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.3e-74 283.1 270 58.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.3e-74 283.1 270 58.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 3.9e-74 282.3 285 55.4
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.9e-74 282.3 253 60.9
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 8.7e-74 281.2 283 56.9
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.1e-73 280.8 273 57.1
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 3.3e-73 279.3 281 55.5
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.3e-73 279.3 283 55.1
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.3e-73 279.3 271 58.3
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.3e-73 278.9 299 53.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.3e-73 278.9 282 55.7
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 4.3e-73 278.9 283 55.5
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.4e-73 278.1 283 55.1
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 9.7e-73 277.7 281 55.2
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.3e-72 277.3 270 58.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.6e-72 276.9 314 50.6
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.8e-72 276.2 260 60.8
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 8.2e-72 274.6 259 58.7
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.4e-71 273.1 281 55.2
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.1e-71 272.7 278 53.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 3.1e-71 272.7 282 55.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.1e-71 272.7 259 57.5
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 4.1e-71 272.3 279 54.8
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 5.3e-71 271.9 271 56.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.9e-71 271.6 281 55.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.0e-71 271.2 283 55.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.2e-70 270.8 278 54.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.5e-70 270.4 284 52.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.6e-70 269.6 282 54.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.6e-70 269.6 281 53.7
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.4e-70 269.2 276 57.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.9e-70 268.5 283 55.1
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 7.7e-70 268.1 281 54.1
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 7.7e-70 268.1 274 55.8
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.0e-69 267.7 280 54.3
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 1.0e-69 267.7 280 54.6
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.0e-69 267.7 274 55.8
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-69 267.3 279 52.7
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.3e-69 267.3 274 55.8
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.7e-69 266.9 270 55.6
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.2e-69 266.5 281 53.0
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.2e-69 266.5 282 52.8
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.2e-69 266.5 259 56.0
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.8e-69 265.8 268 53.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 3.8e-69 265.8 278 52.5
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.8e-69 265.8 278 54.0
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 6.5e-69 265.0 261 54.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.9e-68 263.5 255 54.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-68 263.5 283 54.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 3.2e-68 262.7 251 57.4
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.2e-68 262.7 284 56.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.2e-68 261.5 281 53.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 9.4e-68 261.2 270 54.4
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.7e-67 259.6 278 53.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 6.1e-67 258.5 269 53.5
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.9e-67 258.1 275 52.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 7.9e-67 258.1 282 52.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.0e-66 257.7 270 53.7
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-66 257.3 268 54.1
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 3.0e-66 256.1 277 52.3
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 6.7e-66 255.0 271 55.4
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 6.7e-66 255.0 282 51.8
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 8.8e-66 254.6 273 50.5
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.0e-65 253.4 265 54.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.3e-65 252.7 271 51.7
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 4.3e-65 252.3 278 50.7
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.3e-65 252.3 255 55.3
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 7.4e-65 251.5 278 50.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 9.7e-65 251.1 270 53.7
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.3e-64 250.8 282 52.1
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.3e-64 250.8 270 53.3
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.7e-64 250.4 273 50.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.8e-64 249.6 286 49.3
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.8e-64 249.6 286 49.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 8.2e-64 248.1 292 49.0
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 8.2e-64 248.1 282 48.9
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.1e-63 247.7 278 53.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.1e-63 247.7 280 50.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.4e-63 246.5 247 57.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.4e-63 246.5 283 48.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.4e-63 246.5 283 48.8
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.1e-63 246.1 278 50.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 3.1e-63 246.1 216 60.2
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 4.1e-63 245.7 280 51.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.0e-62 243.4 307 49.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.0e-62 243.4 270 51.1
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.2e-61 240.0 274 51.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.8e-61 239.2 300 48.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 6.5e-61 238.4 253 51.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.1e-60 237.7 249 51.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.5e-60 236.5 300 48.0
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 2.1e-59 233.4 229 55.9
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.9e-59 231.5 256 51.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-58 229.6 262 50.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.1e-58 228.8 213 60.6
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 4.4e-57 225.7 189 62.4
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.2e-54 217.6 288 46.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 5.9e-54 215.3 192 59.4
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 5.0e-53 212.2 256 49.2
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-51 206.1 227 49.8
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.0e-50 204.5 254 49.6
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.4e-50 204.1 260 45.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.7e-46 188.3 262 45.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.2e-44 182.6 258 43.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.7e-43 179.9 271 45.4
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 6.1e-43 178.7 167 56.3
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 8.0e-43 178.3 184 51.1
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.2e-42 175.6 203 48.8
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 6.8e-42 175.3 261 42.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 3.5e-38 162.9 251 41.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.3e-37 161.0 147 54.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 3.2e-36 156.4 157 49.7
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.7e-32 142.9 139 57.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.4e-31 140.2 199 46.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 9.1e-31 138.3 265 35.8
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 5.0e-29 132.5 81 74.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.5e-28 130.2 126 56.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 2.1e-27 127.1 254 34.6
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.7e-24 117.5 96 63.5
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.7e-24 116.3 162 44.4
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 4.9e-24 115.9 119 51.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 4.9e-24 115.9 119 51.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 4.9e-24 115.9 119 51.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.3e-24 115.5 162 44.4
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.4e-23 114.4 161 44.1
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 4.1e-23 112.8 153 47.1
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.3e-20 102.1 118 47.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 7.5e-17 92.0 102 49.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.0e-14 84.0 179 39.1
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 5.6e-12 75.9 106 42.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.7e-11 72.8 281 27.8
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 6.2e-11 72.4 213 31.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.5e-09 65.5 53 64.2
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 1.3e-08 64.7 47 63.8
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 1.1e-07 61.6 66 45.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.1e-07 58.9 126 34.9
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 3.5e-06 56.6 97 38.1
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 6.0e-06 55.8 33 72.7


User provided reference genes

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