Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 9.8e-167 590.1 310 100.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.9e-158 562.0 310 96.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.0e-143 512.7 285 96.1
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.9e-142 508.8 313 88.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.6e-127 459.1 311 78.5
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 4.5e-127 458.4 311 78.1
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 5.8e-127 458.0 311 78.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.2e-126 456.1 313 78.3
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.9e-126 455.7 311 78.5
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 8.4e-126 454.1 311 78.1
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.9e-125 453.0 311 79.4
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 4.2e-125 451.8 310 76.5
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.2e-125 451.8 311 77.5
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.6e-124 449.9 311 76.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.7e-124 449.1 311 77.2
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.7e-124 449.1 311 76.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 3.5e-124 448.7 311 76.8
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 6.0e-124 448.0 311 76.5
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 7.9e-124 447.6 311 76.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.8e-123 446.4 312 77.2
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.8e-123 446.4 311 76.5
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.0e-123 445.7 310 76.1
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.0e-123 445.7 311 77.2
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 3.9e-123 445.3 311 76.2
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 5.1e-123 444.9 311 75.9
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 6.7e-123 444.5 311 76.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 8.7e-123 444.1 311 75.9
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 9.6e-122 440.7 310 74.8
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 9.6e-122 440.7 311 75.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.1e-121 439.5 311 74.9
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.7e-121 438.7 311 75.6
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 4.8e-121 438.3 311 75.2
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 4.8e-121 438.3 311 74.6
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.0e-120 435.3 319 74.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.0e-120 435.3 311 74.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.0e-120 435.3 311 75.2
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 6.9e-120 434.5 311 75.9
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 9.0e-120 434.1 310 74.5
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-119 433.7 317 72.6
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-119 433.7 317 72.6
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-119 433.7 310 74.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.2e-119 433.7 311 75.6
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.5e-119 433.3 310 74.8
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 3.4e-119 432.2 311 73.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.3e-118 430.3 311 73.3
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.7e-118 429.9 309 73.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.8e-118 428.7 319 72.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 3.8e-118 428.7 311 74.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.9e-118 428.3 321 72.9
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.9e-118 428.3 319 72.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.4e-118 427.6 319 72.4
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 8.4e-118 427.6 321 72.3
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.4e-118 427.6 318 71.4
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-117 426.4 318 72.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.2e-117 425.2 311 73.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.5e-117 424.9 320 71.9
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 7.1e-117 424.5 318 73.3
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 9.3e-117 424.1 321 71.3
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.6e-116 423.3 320 71.6
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 2.1e-116 422.9 321 71.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.1e-116 422.9 311 72.7
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.5e-116 422.2 312 72.1
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 3.5e-116 422.2 320 72.2
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 7.9e-116 421.0 311 72.7
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.0e-115 420.6 311 72.7
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.3e-115 420.2 311 71.7
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 2.3e-115 419.5 321 70.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 8.7e-115 417.5 318 70.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.1e-114 417.2 311 72.0
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.9e-114 416.4 319 69.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 3.3e-114 415.6 312 71.8
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.3e-114 415.6 311 71.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.3e-114 415.2 315 71.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-113 413.7 316 69.9
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-113 413.7 345 66.4
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.6e-113 413.3 318 69.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.2e-113 411.0 311 70.4
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 8.2e-113 411.0 312 70.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.4e-112 410.2 313 70.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.4e-112 410.2 319 69.6
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.8e-112 409.8 319 69.6
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.1e-112 409.1 318 70.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 5.3e-112 408.3 362 63.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.0e-111 406.4 310 71.6
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.7e-110 403.3 310 71.3
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.1e-108 396.4 313 71.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.3e-107 392.9 307 67.8
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.5e-106 389.4 298 69.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 4.3e-106 388.7 295 70.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.3e-106 388.7 311 66.9
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.6e-105 386.7 295 70.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.2e-105 386.3 295 69.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.8e-105 386.0 313 67.1
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.8e-105 385.2 278 74.1
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.3e-105 384.8 316 66.1
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 8.2e-105 384.4 311 66.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 8.2e-105 384.4 313 67.7
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.8e-104 383.3 316 65.8
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.0e-103 379.8 317 65.0
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.2e-102 376.3 310 64.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 6.5e-102 374.8 321 64.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.6e-100 370.2 263 74.5
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.1e-100 369.8 297 68.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.7e-100 369.4 287 68.3
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.6e-100 368.6 287 68.3
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.8e-99 366.7 281 71.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.5e-98 363.6 315 63.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.5e-98 363.6 277 70.0
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-97 360.5 320 65.9
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 4.8e-97 358.6 311 66.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.4e-96 357.1 256 74.6
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.2e-94 349.7 311 62.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.2e-94 349.7 263 72.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.7e-92 342.8 315 59.7
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.0e-91 339.3 311 63.7
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 3.9e-91 339.0 319 61.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.1e-90 337.4 263 66.5
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.5e-87 327.0 256 67.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.5e-87 325.5 310 59.4
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.9e-83 312.4 310 58.4
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.5e-78 294.7 221 69.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.5e-77 293.9 230 70.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.2e-76 290.8 242 63.6
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 9.1e-72 274.6 318 49.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 9.1e-72 274.6 741 32.0
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.8e-70 269.2 394 48.2
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-68 264.2 319 47.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.8e-67 260.4 310 51.0
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.8e-59 231.9 291 47.4
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.4e-56 222.2 179 72.6
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.9e-53 213.8 185 66.5
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.8e-44 183.3 250 50.4
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.2e-44 182.2 158 67.7
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.1e-43 179.9 150 70.7
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.5e-42 177.6 123 84.6
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.9e-41 172.6 121 83.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.1e-37 161.4 144 64.6
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.9e-35 151.8 112 64.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 2.0e-34 150.6 244 43.0
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.8e-34 149.1 310 34.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.7e-31 140.2 251 43.8
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.6e-29 132.5 91 74.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-26 124.0 145 58.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 5.8e-26 122.5 128 62.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.6e-26 122.1 110 58.2
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.7e-25 120.9 93 68.8
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.3e-22 110.5 89 60.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-20 104.8 100 53.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.2e-19 99.4 98 65.3
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.2e-16 89.7 70 64.3
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.6e-15 86.3 394 25.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-14 84.7 62 75.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.9e-09 67.0 84 51.2
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.4e-08 63.9 113 38.1


User provided reference genes

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