Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1956.8 1002 100.0
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1561.6 819 92.2
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1444.9 819 85.2
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 0.0e+00 1314.3 713 91.3
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1212.2 813 71.8
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1208.7 819 70.9
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1201.8 819 70.8
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1191.8 819 69.8
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1186.0 817 70.7
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1177.5 818 70.9
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1173.3 816 68.1
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1169.8 816 69.6
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1169.5 816 69.9
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1168.7 814 69.3
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1164.4 815 69.1
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1156.7 818 67.4
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1156.0 814 69.2
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1151.3 818 67.1
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1146.7 818 66.9
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1145.6 914 62.3
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1145.2 880 64.7
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1144.8 817 68.5
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1144.4 816 68.8
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1142.9 822 67.0
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1141.3 818 67.8
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1139.0 817 67.7
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1138.3 822 67.3
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1138.3 816 67.6
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1137.5 815 67.5
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1135.9 821 66.0
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1133.6 914 61.8
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1132.1 823 67.7
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1130.2 824 67.7
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1128.2 817 67.4
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1127.9 832 67.1
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1122.8 820 67.1
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1120.5 816 67.2
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1115.9 819 66.3
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1115.5 814 66.5
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1115.1 851 64.3
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1113.6 819 67.4
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1113.2 815 66.1
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1112.1 868 62.4
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1109.4 819 65.8
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1108.2 822 65.6
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1105.1 788 68.8
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1101.7 817 65.7
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1101.7 820 64.5
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1100.9 817 65.6
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1100.5 818 65.3
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1099.7 818 66.3
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1097.0 816 65.8
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1095.1 840 64.5
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1094.3 815 67.4
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 817 64.5
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 817 64.5
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 820 64.5
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1092.8 820 63.8
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1092.4 821 64.4
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1090.5 820 63.3
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1090.5 763 69.3
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1090.1 817 63.5
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1087.8 816 63.6
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1084.3 817 63.3
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1083.2 820 62.9
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 817 63.2
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1079.3 822 63.5
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1078.2 821 62.9
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 3.0e-310 1068.5 929 57.9
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 5.2e-310 1067.8 819 62.3
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 1.2e-309 1066.6 855 63.9
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.5e-306 1055.0 817 62.1
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 6.6e-305 1050.8 822 63.1
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 2.8e-303 1045.4 800 63.8
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 2.8e-303 1045.4 782 65.0
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 1.8e-302 1042.7 698 72.2
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 3.4e-301 1038.5 828 62.6
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 3.4e-301 1038.5 823 62.5
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 2.2e-300 1035.8 821 61.6
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 6.4e-300 1034.2 814 63.4
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 2.5e-296 1022.3 817 62.1
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 7.3e-296 1020.8 823 61.2
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 1.2e-295 1020.0 836 60.0
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 2.1e-295 1019.2 839 60.1
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 4.1e-283 978.4 739 63.7
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 9.2e-283 977.2 815 59.8
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 4.6e-282 974.9 831 57.9
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 9.5e-280 967.2 701 68.0
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 4.4e-277 958.4 639 71.2
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 1.7e-273 946.4 808 57.5
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 5.1e-273 944.9 701 66.6
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 6.2e-271 937.9 836 55.9
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 1.5e-264 916.8 850 56.6
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 2.4e-259 899.4 784 59.3
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 2.6e-253 879.4 652 66.6
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 8.7e-241 837.8 847 50.1
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 1.3e-236 823.9 860 49.2
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 1.0e-233 814.3 688 62.1
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 5.9e-229 798.5 841 47.3
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 1.1e-216 757.7 770 50.4
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 7.5e-200 701.8 766 49.7
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 1.0e-193 681.4 750 45.2
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 5.2e-185 652.5 470 67.2
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 8.6e-172 608.6 479 62.2
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 9.2e-158 562.0 683 43.8
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 1.2e-154 551.6 809 39.7
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 1.4e-150 538.1 553 52.3
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.1e-116 423.3 298 69.5
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.2e-114 417.9 415 52.5
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 3.0e-108 397.5 297 66.7
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 5.7e-107 393.3 346 59.0
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 7.2e-94 349.7 246 68.7
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 3.7e-90 337.4 199 76.9
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.8e-89 335.1 188 80.3
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.2e-88 332.4 186 80.6
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 1.2e-88 332.4 238 63.4
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.1e-78 299.3 222 59.0
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 9.5e-78 296.2 464 35.8
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 3.7e-74 284.3 198 63.6
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 2.4e-49 201.8 147 61.9
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 9.9e-43 179.9 131 57.3
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 6.9e-28 130.6 181 46.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 3.5e-24 118.2 167 39.5
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 8.2e-13 80.5 110 46.4
CsaV3_6G001950 Cucumis sativus L. HOM05D005937 ORTHO05D172386 6.9e-12 77.4 75 58.7
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 3.2e-09 68.6 96 45.8
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 9.3e-09 67.0 181 29.8
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.6e-08 66.2 54 63.0


User provided reference genes

Program Settings