Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005640 Citrullus lanatus HOM05D007120 ORTHO05D008881 1.1e-59 233.0 112 100.0
CsaV3_6G002350 Cucumis sativus L. HOM05D007120 ORTHO05D008881 1.1e-14 83.6 48 79.2
MELO3C020013.2 Cucumis melo HOM05D007120 ORTHO05D008881 1.8e-14 82.8 41 92.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 4.0e-09 65.1 41 73.2
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 2.6e-08 62.4 40 75.0
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.4e-08 62.0 41 65.9
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.4e-08 62.0 41 65.9
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.4e-08 62.0 41 65.9
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 7.5e-08 60.8 41 68.3
Sed0001421 Sechium edule HOM05D007120 ORTHO05D008881 7.5e-08 60.8 45 68.9
Sopen07g008940 Solanum pennellii HOM05D007120 ORTHO05D008881 7.5e-08 60.8 44 65.9
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 9.8e-08 60.5 40 77.5
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 1.3e-07 60.1 41 65.9
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.3e-07 60.1 41 65.9
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 1.7e-07 59.7 37 73.0
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.8e-07 58.9 41 63.4
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.7e-07 58.5 41 63.4
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.7e-07 58.5 40 70.0
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 4.8e-07 58.2 41 63.4
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 4.8e-07 58.2 41 65.9
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 6.3e-07 57.8 41 70.7
Sc11g0006040 Simmondsia chinensis HOM05D007120 ORTHO05D008881 6.3e-07 57.8 43 62.8
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 6.3e-07 57.8 40 70.0
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.1e-06 57.0 41 68.3
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 1.1e-06 57.0 40 67.5
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.4e-06 56.6 35 77.1
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 1.8e-06 56.2 41 61.0
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 2.4e-06 55.8 41 61.0
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.4e-06 55.8 40 67.5
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 2.4e-06 55.8 41 65.9
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 2.4e-06 55.8 41 65.9
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 2.4e-06 55.8 41 63.4
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 3.1e-06 55.5 41 61.0
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.1e-06 55.1 45 62.2
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.4e-06 54.7 35 74.3
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.4e-06 54.7 40 67.5
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 5.4e-06 54.7 41 61.0
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 7.0e-06 54.3 45 60.0
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 7.0e-06 54.3 42 69.0
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.0e-06 54.3 42 69.0
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 9.1e-06 53.9 37 67.6
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 9.1e-06 53.9 41 65.9
COL.COLO4_19468 Corchorus olitorius HOM05D007120 ORTHO05D008881 9.1e-06 53.9 45 57.8


User provided reference genes

Program Settings