Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.9e-204 715.7 383 100.0
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 4.9e-176 621.3 383 87.2
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.9e-175 619.4 351 90.9
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.6e-166 589.7 380 86.3
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.0e-128 464.2 388 67.8
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 8.5e-128 461.1 390 67.4
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.4e-127 460.3 393 66.4
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.9e-127 459.9 388 67.5
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 5.1e-125 451.8 394 63.2
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.1e-124 450.7 351 71.5
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 5.3e-122 441.8 370 67.8
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.7e-120 436.8 363 65.8
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 2.2e-120 436.4 358 68.7
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.2e-118 430.6 360 67.5
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.1e-118 429.9 362 67.1
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.7e-118 428.7 364 66.5
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 6.1e-118 428.3 327 70.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.0e-117 427.6 369 64.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.0e-117 427.6 345 67.2
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 2.3e-117 426.4 379 64.6
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 8.8e-117 424.5 370 66.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.1e-116 424.1 369 67.8
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.1e-116 424.1 380 65.3
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.5e-116 423.7 384 66.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.4e-116 422.2 380 65.0
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 4.8e-115 418.7 348 66.7
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 4.8e-115 418.7 365 65.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 8.2e-115 417.9 381 62.7
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.1e-114 417.5 381 62.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.8e-114 416.8 347 66.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.8e-114 416.8 347 66.9
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 3.1e-114 416.0 335 67.2
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 7.0e-114 414.8 304 73.0
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 9.1e-114 414.5 290 74.8
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.0e-113 413.3 311 71.1
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 2.0e-113 413.3 311 71.1
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.7e-113 412.9 368 64.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 3.5e-113 412.5 259 82.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 4.5e-113 412.1 348 67.2
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 5.9e-113 411.8 352 65.9
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 5.9e-113 411.8 404 61.4
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.3e-112 410.6 267 78.3
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.3e-112 410.6 346 65.3
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.7e-112 410.2 371 64.2
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.7e-112 410.2 347 66.6
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-112 409.8 362 66.9
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-112 409.8 338 67.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 2.2e-112 409.8 362 66.9
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.0e-112 408.7 357 65.0
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 5.0e-112 408.7 349 64.2
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 5.0e-112 408.7 342 67.0
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 6.5e-112 408.3 352 65.6
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 8.5e-112 407.9 267 78.3
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.5e-111 407.1 416 58.7
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 2.5e-111 406.4 283 77.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.5e-111 406.4 336 68.2
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 3.2e-111 406.0 338 64.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.6e-110 402.5 326 66.0
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 3.6e-110 402.5 312 69.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 3.6e-110 402.5 262 77.9
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 3.6e-110 402.5 359 63.8
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 6.1e-110 401.7 379 59.1
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.4e-109 400.6 262 76.3
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.4e-109 400.6 297 73.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.3e-109 399.8 353 64.6
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 4.0e-109 399.1 254 78.7
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 4.0e-109 399.1 313 67.7
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.2e-109 398.7 354 64.4
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 6.8e-109 398.3 261 78.5
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 2.0e-108 396.7 354 63.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.4e-108 396.0 375 60.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 3.4e-108 396.0 312 68.6
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 9.8e-108 394.4 383 59.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.8e-108 394.4 350 63.1
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.3e-107 394.0 253 82.6
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 3.7e-107 392.5 256 79.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 4.8e-107 392.1 291 69.1
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.4e-106 390.6 352 64.8
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.4e-106 390.6 351 64.1
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 1.8e-106 390.2 380 60.8
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.1e-106 389.4 257 78.6
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 9.1e-106 387.9 339 64.3
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 9.1e-106 387.9 339 64.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 9.1e-106 387.9 379 60.4
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 9.1e-106 387.9 321 66.4
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.9e-105 385.2 265 74.0
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.0e-104 384.4 389 61.2
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 8.5e-104 381.3 337 62.0
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 1.5e-103 380.6 280 73.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.5e-103 380.6 393 56.7
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.9e-103 380.2 321 64.5
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.5e-103 379.8 260 74.2
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 5.5e-103 378.6 260 73.8
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 8.0e-102 374.8 333 63.4
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 5.2e-101 372.1 319 63.6
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 7.5e-100 368.2 319 63.6
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 7.5e-100 368.2 262 69.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 6.3e-99 365.2 421 53.9
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.6e-97 360.5 238 75.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 7.7e-97 358.2 216 81.0
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 7.7e-97 358.2 360 56.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 7.7e-97 358.2 260 69.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 5.0e-96 355.5 388 55.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 5.0e-96 355.5 278 66.5
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.1e-95 354.4 361 55.1
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 4.7e-94 349.0 219 77.6
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 6.1e-94 348.6 201 85.6
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-89 333.6 339 58.1
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 3.0e-88 329.7 231 71.0
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.5e-87 326.6 255 65.5
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.6e-84 316.6 338 57.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 4.4e-84 315.8 235 66.0
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 4.4e-84 315.8 178 87.1
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 5.8e-84 315.5 179 87.2
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.3e-83 314.3 241 68.9
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.3e-83 314.3 181 87.3
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.4e-82 310.1 249 63.5
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.3e-77 293.5 253 60.9
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 4.0e-77 292.7 252 60.7
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.4e-76 289.3 298 59.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.7e-75 287.3 193 80.8
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 5.4e-74 282.3 247 58.7
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.8e-73 278.5 272 60.3
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.4e-68 262.7 159 86.2
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 9.9e-68 261.5 388 47.4
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.8e-65 251.9 155 79.4
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 2.8e-62 243.4 153 77.8
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.3e-59 234.6 375 46.9
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.5e-57 226.5 151 74.2
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 5.6e-55 219.2 351 45.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 6.9e-53 212.2 226 48.2
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-52 210.7 226 47.8
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 9.9e-52 208.4 131 80.9
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-51 207.6 131 80.9
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-50 204.9 131 80.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-50 204.9 131 80.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-50 204.5 131 79.4
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-50 204.5 131 79.4
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.5e-47 194.5 131 80.9
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 7.4e-47 192.2 131 80.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 8.1e-46 188.7 131 79.4
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.5e-44 184.5 362 38.7
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-41 174.9 102 82.4
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.2e-41 174.9 102 82.4
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 6.0e-41 172.6 256 41.0
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 8.7e-40 168.7 265 38.5
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 4.3e-39 166.4 103 84.5
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 4.3e-39 166.4 103 84.5
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.6e-39 165.2 165 58.8
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 2.1e-38 164.1 103 82.5
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.7e-35 154.5 91 83.5
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 1.2e-33 148.3 232 47.0
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.6e-33 147.9 232 45.7
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 6.7e-32 142.5 131 65.6
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.3e-31 140.2 149 57.7
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.4e-31 139.0 219 45.2
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.1e-29 133.7 112 63.4
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.1e-29 133.3 211 48.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.5e-23 114.8 82 68.3
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 4.3e-23 113.2 190 41.1
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.3e-22 111.7 84 79.8
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.8e-22 109.8 78 71.8
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 5.3e-21 106.3 65 70.8
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.2e-20 105.1 194 33.5
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.5e-20 104.8 63 77.8
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.8e-14 84.0 44 93.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.2e-12 78.6 72 62.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-12 77.0 71 57.7


User provided reference genes

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