Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.3e-221 771.9 393 100.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 9.1e-202 706.8 375 96.3
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 1.2e-201 706.4 375 96.3
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 2.3e-197 692.2 375 94.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 3.5e-177 625.2 375 82.9
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 4.3e-175 618.2 375 83.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 2.8e-174 615.5 375 81.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 8.0e-174 614.0 375 82.7
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.8e-173 612.8 379 80.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 3.1e-173 612.1 375 81.9
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.5e-172 609.8 404 76.5
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 3.4e-172 608.6 375 81.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 4.4e-172 608.2 379 80.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 7.5e-172 607.4 375 79.2
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 9.8e-172 607.1 375 81.1
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.3e-171 606.7 387 79.1
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 6.4e-171 604.4 375 80.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 2.4e-170 602.4 375 80.0
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 9.2e-170 600.5 375 80.8
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.0e-169 599.4 379 79.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.0e-169 599.4 379 79.7
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.3e-168 596.7 375 79.7
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.3e-168 596.7 375 79.5
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 2.3e-168 595.9 375 80.5
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 3.9e-168 595.1 375 79.7
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 5.0e-168 594.7 374 79.1
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.6e-168 594.0 373 80.2
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.6e-168 594.0 373 80.2
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.5e-167 593.2 375 79.2
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 3.3e-167 592.0 377 79.3
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 6.2e-166 587.8 374 77.8
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 1.4e-165 586.6 375 78.4
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 3.1e-165 585.5 374 78.1
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.5e-164 583.2 374 77.0
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 9.8e-164 580.5 376 78.7
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 1.7e-163 579.7 375 77.9
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 2.2e-163 579.3 374 76.7
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 3.7e-163 578.6 375 75.7
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 1.9e-162 576.2 374 77.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 9.2e-162 573.9 375 77.1
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 3.0e-160 568.9 377 74.8
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 5.1e-160 568.2 375 76.0
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 6.6e-160 567.8 375 76.3
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 2.5e-159 565.8 374 75.4
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 6.2e-158 561.2 375 75.7
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 1.1e-157 560.5 374 75.4
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 1.4e-157 560.1 373 74.0
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 3.1e-157 558.9 374 74.9
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 7.6e-156 554.3 377 73.2
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 2.2e-155 552.7 373 74.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 2.9e-155 552.4 377 73.2
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 6.4e-155 551.2 373 74.0
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 6.4e-155 551.2 377 73.2
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 6.4e-155 551.2 441 66.7
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 1.1e-154 550.4 375 74.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.1e-154 550.4 375 73.9
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 2.4e-154 549.3 375 73.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 3.2e-154 548.9 373 73.7
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 3.2e-154 548.9 377 72.9
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 4.1e-154 548.5 377 72.9
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 4.1e-154 548.5 375 73.1
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 6.0e-153 544.7 334 81.4
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 2.3e-152 542.7 373 72.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 2.3e-152 542.7 374 71.1
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-151 539.7 375 72.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 7.3e-151 537.7 374 74.1
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 7.3e-151 537.7 374 74.1
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 7.3e-151 537.7 379 71.2
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 9.6e-151 537.3 374 73.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 8.1e-150 534.3 379 71.8
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 5.4e-146 521.5 375 70.7
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 6.2e-142 508.1 375 68.5
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 2.9e-139 499.2 375 69.3
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 2.7e-137 492.7 402 64.9
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 1.8e-136 490.0 371 68.5
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.2e-132 477.2 374 64.4
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 3.4e-132 475.7 486 54.3
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 2.2e-131 473.0 379 65.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 3.0e-128 462.6 379 60.9
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 6.7e-128 461.5 374 63.1
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.9e-119 433.3 361 61.2
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 5.1e-112 408.7 380 56.8
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 9.7e-111 404.4 559 45.6
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 4.1e-109 399.1 376 56.1
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 4.5e-108 395.6 380 54.5
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.7e-107 393.7 354 62.1
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 5.0e-107 392.1 363 55.4
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 5.5e-106 388.7 266 75.2
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 7.9e-105 384.8 380 57.9
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 3.4e-100 369.4 381 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 3.0e-96 356.3 387 49.4
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 5.2e-96 355.5 245 71.4
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 2.8e-94 349.7 304 62.2
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 3.1e-93 346.3 377 48.5
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 7.0e-93 345.1 375 50.7
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.6e-89 332.8 279 65.6
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 4.4e-79 299.3 248 61.7
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 8.9e-64 248.4 375 42.1
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.0e-59 235.0 134 86.6
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.9e-45 187.6 232 51.3
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 2.4e-40 170.6 106 77.4
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 5.1e-27 126.3 76 77.6
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.1e-26 125.2 73 82.2
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.3e-24 116.3 72 77.8
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 2.9e-22 110.5 403 27.5
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 2.8e-17 94.0 68 72.1
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 4.8e-17 93.2 58 81.0
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 2.0e-15 87.8 58 74.1
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 2.2e-14 84.3 53 77.4
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.4e-13 80.9 58 70.7
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 4.2e-13 80.1 53 73.6
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 9.3e-13 79.0 58 65.5
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 2.7e-12 77.4 188 31.4
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 7.9e-12 75.9 115 39.1
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 3.7e-09 67.0 49 57.1
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 2.4e-08 64.3 42 73.8
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 2.0e-07 61.2 52 59.6


User provided reference genes

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