Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.9e-71 272.3 132 100.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 4.5e-12 75.1 50 80.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 4.5e-12 75.1 50 80.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 7.7e-12 74.3 64 67.2
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 1.0e-11 73.9 50 78.0
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 2.9e-11 72.4 62 67.7
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.9e-11 72.4 62 67.7
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 2.9e-11 72.4 62 67.7
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 2.9e-11 72.4 50 78.0
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 2.9e-11 72.4 50 78.0
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 2.9e-11 72.4 50 78.0
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 3.8e-11 72.0 50 76.0
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 5.0e-11 71.6 61 68.9
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 6.5e-11 71.2 50 74.0
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 8.5e-11 70.9 50 76.0
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 8.5e-11 70.9 50 76.0
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 1.5e-10 70.1 61 65.6
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.9e-10 69.7 50 74.0
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.9e-10 69.7 50 74.0
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.9e-10 69.7 50 74.0
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 2.5e-10 69.3 50 72.0
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 2.5e-10 69.3 50 74.0
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 3.2e-10 68.9 50 74.0
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 3.2e-10 68.9 50 74.0
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 4.2e-10 68.6 50 72.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 4.2e-10 68.6 50 72.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 4.2e-10 68.6 50 70.0
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 4.2e-10 68.6 50 72.0
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 5.5e-10 68.2 50 72.0
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 9.4e-10 67.4 50 70.0
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 9.4e-10 67.4 50 72.0
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 9.4e-10 67.4 50 68.0
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.2e-09 67.0 67 55.2
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.7e-09 65.9 50 68.0
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 2.7e-09 65.9 50 66.0
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 2.7e-09 65.9 50 70.0
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 66.0
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 70.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 70.0
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 70.0
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 66.0
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 3.6e-09 65.5 50 68.0
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 4.7e-09 65.1 50 66.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 4.7e-09 65.1 61 60.7
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 4.7e-09 65.1 50 66.0
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 64.0
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 64.0
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 64.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 64.0
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 64.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 6.1e-09 64.7 49 73.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 6.1e-09 64.7 50 68.0
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 64.0
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 64.0
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 64.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 70.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 70.0
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 70.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 8.0e-09 64.3 50 66.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 1.4e-08 63.5 50 62.0
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 1.4e-08 63.5 50 64.0
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 1.4e-08 63.5 50 66.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.8e-08 63.2 50 68.0
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.8e-08 63.2 50 68.0
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 1.8e-08 63.2 50 68.0
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 1.8e-08 63.2 56 62.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 2.3e-08 62.8 50 68.0
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 2.3e-08 62.8 50 68.0
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 2.3e-08 62.8 74 52.7
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.0e-08 62.4 61 57.4
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.0e-08 62.4 61 57.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 3.0e-08 62.4 50 64.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 3.0e-08 62.4 50 68.0
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 4.0e-08 62.0 36 80.6
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 5.2e-08 61.6 50 66.0
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 6.7e-08 61.2 50 64.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 6.7e-08 61.2 35 80.0
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 6.7e-08 61.2 50 66.0
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 8.8e-08 60.8 35 82.9
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 8.8e-08 60.8 35 82.9
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 8.8e-08 60.8 47 66.0
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 1.2e-07 60.5 50 62.0
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 1.5e-07 60.1 50 62.0
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 2.0e-07 59.7 50 66.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 2.0e-07 59.7 50 66.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 2.0e-07 59.7 50 64.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.6e-07 59.3 36 75.0
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 4.4e-07 58.5 50 60.0
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 4.4e-07 58.5 36 75.0
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 7.5e-07 57.8 50 60.0
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 9.7e-07 57.4 60 55.0
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.7e-06 56.6 41 65.9
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.2e-06 56.2 36 72.2
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 2.2e-06 56.2 36 72.2
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.7e-06 55.5 52 55.8


User provided reference genes

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