Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.2e-181 639.8 343 100.0
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.3e-171 604.7 346 91.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.0e-169 600.1 347 89.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 8.6e-164 580.5 346 86.4
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.4e-150 535.8 346 77.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.1e-149 532.7 347 76.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 3.3e-147 525.4 347 75.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 3.6e-146 521.9 327 79.5
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.4e-145 520.0 347 76.1
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.4e-145 520.0 350 72.3
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.4e-145 519.2 346 74.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 5.2e-145 518.1 346 74.3
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 5.2e-145 518.1 346 78.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.3e-143 513.5 346 75.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-142 510.0 346 73.7
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.9e-142 509.6 346 70.2
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 7.1e-142 507.7 346 73.4
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-141 506.5 346 73.4
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.7e-140 503.1 346 73.1
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.7e-140 503.1 348 73.9
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.0e-140 502.3 346 70.2
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.6e-140 501.1 346 72.5
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.1e-139 500.4 346 71.7
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.5e-139 499.2 348 71.8
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 9.6e-139 497.3 347 69.7
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.6e-139 497.3 338 73.7
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 3.6e-138 495.4 347 70.9
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.7e-138 495.0 341 70.4
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.2e-138 494.6 346 70.5
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 6.2e-138 494.6 350 72.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-137 492.7 341 68.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.4e-137 492.7 347 70.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 6.9e-137 491.1 342 76.6
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 6.9e-137 491.1 348 71.0
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.0e-136 489.6 346 68.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.4e-136 488.8 346 75.4
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-136 488.4 346 74.3
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.8e-136 488.0 346 72.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.8e-136 488.0 357 67.5
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.6e-136 487.6 346 74.9
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-134 483.8 346 73.4
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.9e-134 483.0 346 71.4
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.2e-134 482.3 341 71.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.2e-134 482.3 346 68.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 3.2e-134 482.3 349 70.8
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.2e-134 481.9 347 67.1
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 5.4e-134 481.5 348 70.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 5.4e-134 481.5 345 69.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.4e-134 481.5 349 70.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 4.6e-133 478.4 346 75.1
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 6.0e-133 478.0 348 75.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.0e-132 477.2 346 67.3
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.0e-132 477.2 345 68.1
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.0e-132 477.2 347 68.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.7e-132 476.5 346 67.1
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 6.6e-132 474.6 341 71.3
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.7e-132 474.2 341 71.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.1e-131 473.8 346 76.0
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.9e-131 473.0 346 73.4
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.3e-131 471.9 346 74.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.3e-131 471.9 341 72.7
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 4.3e-131 471.9 348 74.1
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.3e-131 471.9 348 70.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 7.3e-131 471.1 347 74.1
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.3e-130 470.3 348 74.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.6e-130 469.9 347 69.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.6e-130 469.9 348 71.6
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-130 469.5 345 72.5
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.1e-130 469.5 344 74.1
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 6.2e-130 468.0 341 73.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.2e-130 468.0 347 69.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-129 467.2 345 72.5
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.8e-129 466.5 343 63.6
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 3.1e-129 465.7 343 69.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.1e-129 465.7 346 72.3
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.9e-129 464.5 346 72.5
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.9e-129 464.5 341 69.8
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.0e-129 464.2 341 72.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.6e-128 462.6 349 67.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 9.9e-128 460.7 347 69.2
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.9e-128 460.7 345 70.4
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.3e-127 460.3 346 68.2
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.2e-127 459.5 349 67.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.9e-127 459.1 371 62.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.4e-126 454.9 346 67.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.1e-126 454.5 347 69.2
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.6e-125 453.4 345 67.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.7e-125 452.6 344 66.3
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.8e-124 449.9 446 53.8
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.6e-122 443.4 341 70.1
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.8e-122 442.6 346 66.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.8e-122 442.6 342 65.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.8e-122 442.6 350 66.0
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.8e-121 439.9 352 67.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.8e-121 439.9 307 70.7
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.3e-121 438.3 348 66.4
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.9e-121 438.0 346 63.9
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 2.6e-120 436.0 349 65.3
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 3.4e-120 435.6 349 65.6
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.9e-119 432.6 346 61.8
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 6.4e-119 431.4 346 62.7
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.9e-118 429.9 346 63.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.2e-118 429.1 340 59.7
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.5e-118 428.3 346 62.1
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.7e-117 426.0 350 59.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.6e-117 425.2 340 60.9
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 1.0e-116 424.1 346 60.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.0e-116 424.1 346 63.9
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.9e-116 422.2 362 63.8
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 5.1e-116 421.8 348 63.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.1e-115 420.6 339 63.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.5e-115 420.2 342 61.7
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.5e-115 419.5 347 64.6
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.3e-114 417.2 346 60.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.8e-114 416.0 348 64.9
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 6.2e-114 414.8 292 72.3
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.1e-113 414.1 305 73.4
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.8e-113 413.3 346 57.2
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.0e-113 412.1 349 57.6
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 5.3e-113 411.8 353 58.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.2e-111 406.4 348 62.6
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.1e-110 404.1 346 55.5
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.9e-110 403.3 346 60.4
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.2e-110 402.1 342 62.3
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 7.1e-110 401.4 346 61.6
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.7e-109 399.4 351 61.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.6e-109 398.7 340 57.4
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.0e-108 397.5 235 80.0
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.1e-108 395.2 296 66.9
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.3e-107 392.1 430 56.5
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 5.7e-107 391.7 291 70.8
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 5.7e-107 391.7 343 61.5
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.9e-104 381.7 337 62.9
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.7e-98 363.6 295 61.7
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.4e-97 359.8 244 77.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.4e-94 350.5 291 59.5
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 4.2e-94 349.0 300 69.0
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-91 340.9 359 54.9
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 7.4e-91 338.2 251 74.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.0e-87 327.8 282 58.5
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.3e-87 327.4 244 66.0
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.7e-87 327.0 243 69.5
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.7e-85 319.7 277 58.5
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 6.1e-85 318.5 277 63.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.0e-84 316.2 339 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.4e-83 312.4 336 45.5
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 9.7e-83 311.2 340 50.3
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.2e-82 310.1 224 71.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-81 307.0 219 68.5
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 6.5e-79 298.5 187 77.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.5e-78 295.4 346 47.7
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 8.8e-76 288.1 244 59.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.6e-72 277.3 244 63.5
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 3.5e-72 276.2 337 42.7
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.1e-70 271.2 245 55.9
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.2e-69 267.7 228 54.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.6e-69 267.3 341 46.0
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.0e-68 264.6 228 55.3
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 3.5e-64 249.6 230 55.7
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.5e-62 242.3 229 51.1
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.6e-59 233.4 144 73.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-54 217.2 130 76.9
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.4e-49 199.1 144 66.0
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.0e-43 180.6 131 70.2
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-42 177.2 128 69.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 7.8e-40 168.7 125 68.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 8.6e-39 165.2 102 73.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.3e-31 141.4 119 62.2
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.9e-28 128.6 76 78.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.1e-22 111.7 64 75.0
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 8.1e-21 105.5 163 33.1
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.9e-20 102.4 54 79.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.1e-17 92.4 54 75.9
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 8.1e-13 79.0 117 40.2
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 4.9e-10 69.7 103 41.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 5.4e-09 66.2 39 76.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 3.3e-06 57.0 75 52.0
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 4.3e-06 56.6 65 36.9


User provided reference genes

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