Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.9e-294 1014.2 574 100.0
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 9.1e-243 843.6 612 82.4
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 9.2e-195 684.1 607 72.5
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.8e-166 590.1 352 84.9
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 1.1e-131 474.6 619 54.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.2e-131 473.0 570 57.7
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 3.3e-128 463.0 618 52.4
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 2.7e-125 453.4 614 48.2
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.7e-124 450.7 620 53.2
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.0e-121 441.4 607 53.0
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 5.0e-116 422.5 533 57.0
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.5e-115 421.0 533 56.8
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 5.5e-115 419.1 534 56.4
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 5.2e-113 412.5 508 57.1
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.2e-111 407.1 550 54.4
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 3.7e-111 406.4 526 56.7
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 1.8e-110 404.1 519 56.3
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.4e-110 403.7 597 49.7
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.1e-107 394.8 561 50.8
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 5.6e-107 392.5 476 55.9
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 8.0e-106 388.7 532 54.7
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.6e-104 383.6 485 56.5
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.4e-102 377.9 514 53.9
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 2.3e-100 370.5 487 52.6
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 6.2e-98 362.5 448 58.7
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 1.1e-97 361.7 490 53.7
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.2e-96 358.2 505 54.9
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 7.5e-96 355.5 448 57.8
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 6.4e-95 352.4 448 57.1
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.2e-94 350.1 631 46.4
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 4.1e-94 349.7 498 53.4
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 5.4e-94 349.4 560 47.3
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 6.0e-93 345.9 484 52.9
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 5.0e-92 342.8 485 54.0
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 9.5e-91 338.6 446 55.6
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 1.6e-90 337.8 437 56.3
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 2.1e-90 337.4 437 55.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 5.2e-89 332.8 441 56.7
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 1.2e-88 331.6 608 46.7
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 2.9e-87 327.0 440 56.1
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 6.4e-87 325.9 466 52.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.9e-86 324.3 453 53.6
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 5.4e-86 322.8 443 53.7
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 7.1e-86 322.4 443 54.4
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 1.2e-85 321.6 565 47.3
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 1.2e-85 321.6 452 54.0
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.2e-85 321.6 378 61.6
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 2.7e-85 320.5 450 54.9
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 6.0e-85 319.3 485 51.1
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 2.3e-84 317.4 453 53.9
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.3e-84 317.4 454 39.9
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.9e-83 314.3 450 53.3
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 2.5e-83 313.9 384 59.1
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 5.6e-83 312.8 453 53.0
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 7.3e-83 312.4 490 50.0
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-81 308.5 450 52.4
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.1e-81 308.5 449 51.9
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 1.1e-81 308.5 460 51.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 3.1e-81 307.0 442 53.4
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 6.8e-81 305.8 445 52.1
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.2e-80 305.1 508 49.0
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.5e-80 304.7 445 52.6
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.5e-80 304.7 435 55.4
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 5.8e-80 302.8 438 53.2
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 5.8e-80 302.8 485 49.5
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.7e-79 301.2 464 51.3
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.4e-78 297.4 381 57.5
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.6e-77 294.7 472 50.4
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 4.6e-77 293.1 444 51.8
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 8.7e-76 288.9 505 47.9
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 1.1e-75 288.5 404 56.4
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 7.3e-75 285.8 500 47.2
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.6e-74 284.6 446 51.3
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 5.8e-72 276.2 499 46.9
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 2.4e-70 270.8 610 43.4
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.7e-69 267.3 491 46.4
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 4.6e-69 266.5 582 41.4
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 4.6e-69 266.5 372 42.2
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 4.6e-69 266.5 372 42.2
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 3.9e-68 263.5 486 47.7
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 7.3e-67 259.2 516 47.3
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.1e-66 257.7 563 44.8
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 8.1e-66 255.8 465 44.9
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 2.4e-65 254.2 450 48.2
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 3.4e-64 250.4 505 45.1
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 4.5e-64 250.0 428 50.5
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.3e-63 248.4 472 47.0
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.2e-63 247.7 445 46.5
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.0e-60 238.8 416 50.7
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-57 228.8 458 44.3
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.1e-57 228.8 377 49.6
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-56 225.3 458 44.1
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 6.4e-55 219.5 458 41.7
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 2.1e-53 214.5 350 52.0
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 2.7e-53 214.2 200 52.5
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 3.0e-52 210.7 445 43.4
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 3.0e-52 210.7 445 43.4
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 3.7e-50 203.8 235 45.5
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.3e-47 195.3 218 47.7
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.5e-43 181.0 463 43.6
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.7e-37 161.0 159 56.0
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.8e-36 158.3 315 33.3
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 2.5e-30 137.9 360 29.4
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 2.5e-30 137.9 360 29.4
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.3e-12 78.2 191 27.2
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 1.3e-10 72.4 145 33.8
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 2.4e-09 68.2 50 64.0
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 2.4e-09 68.2 50 64.0
Atru.chr10.1354 Acer truncatum HOM05D007093 ORTHO05D008910 9.1e-09 66.2 46 63.0
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 1.2e-08 65.9 187 25.1
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.7e-08 64.7 158 26.6
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.7e-07 62.0 138 28.3
MD00G1189300 Malus domestica HOM05D008684 ORTHO05D010796 2.2e-07 61.6 184 23.9
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.8e-07 60.8 138 28.3
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 3.8e-07 60.8 138 28.3
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 5.0e-07 60.5 138 27.5
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 5.0e-07 60.5 192 21.4
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 6.5e-07 60.1 184 22.3
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 8.5e-07 59.7 40 70.0
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.1e-06 59.3 123 28.5
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 1.1e-06 59.3 196 22.4
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 1.5e-06 58.9 198 21.7
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 1.9e-06 58.5 176 26.7
Ciclev10025033m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.2e-06 57.8 185 26.5
Phvul.011G017600 Phaseolus vulgaris HOM05D002785 ORTHO05D003042 5.5e-06 57.0 197 22.8
SMO275G0048 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 5.5e-06 57.0 150 28.7
PGSC0003DMG400021371 Solanum tuberosum HOM05D006596 ORTHO05D008497 5.5e-06 57.0 117 27.4
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 7.2e-06 56.6 135 28.9
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 7.2e-06 56.6 125 25.6
ECA240G4052 Erigeron canadensis HOM05D000162 ORTHO05D000090 7.2e-06 56.6 125 25.6
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 7.2e-06 56.6 117 27.4
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 9.4e-06 56.2 175 22.9
Oeu041338.1 Olea europaea HOM05D000001 ORTHO05D000003 9.4e-06 56.2 147 29.9
TWI77G0293 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.4e-06 56.2 189 24.3


User provided reference genes

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