Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 5.4e-37 157.1 79 100.0
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 9.9e-31 136.3 92 79.3
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 2.9e-30 134.8 91 79.1
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 1.2e-23 112.8 95 68.4
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.0e-15 85.5 88 55.7
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 4.5e-15 84.3 93 54.8
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 5.8e-15 84.0 92 57.6
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.6e-15 83.6 88 56.8
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 7.6e-15 83.6 88 54.5
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 7.6e-15 83.6 88 54.5
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 7.6e-15 83.6 76 53.9
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 9.9e-15 83.2 93 53.8
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.7e-14 82.4 83 61.4
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 2.2e-14 82.0 91 57.1
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 2.9e-14 81.6 88 55.7
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 3.8e-14 81.3 86 58.1
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 3.8e-14 81.3 87 51.7
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 3.8e-14 81.3 83 60.2
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 6.4e-14 80.5 88 55.7
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 8.4e-14 80.1 91 53.8
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.4e-13 79.3 83 60.2
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.4e-13 78.6 89 59.6
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 3.2e-13 78.2 76 59.2
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 4.2e-13 77.8 87 55.2
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 4.2e-13 77.8 93 53.8
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 7.1e-13 77.0 86 55.8
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 9.3e-13 76.6 77 57.1
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 9.3e-13 76.6 87 51.7
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 1.6e-12 75.9 90 53.3
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 2.7e-12 75.1 83 54.2
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.5e-12 74.7 55 60.0
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 3.5e-12 74.7 85 50.6
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 4.6e-12 74.3 50 68.0
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 4.6e-12 74.3 85 55.3
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 4.6e-12 74.3 92 50.0
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 6.0e-12 73.9 50 68.0
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 6.0e-12 73.9 90 53.3
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 1.0e-11 73.2 93 46.2
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.0e-11 73.2 93 50.5
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 1.0e-11 73.2 74 54.1
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.3e-11 72.8 93 48.4
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 1.3e-11 72.8 74 54.1
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.3e-11 72.8 90 53.3
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 1.8e-11 72.4 82 53.7
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 1.8e-11 72.4 90 53.3
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 1.8e-11 72.4 88 52.3
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.0e-11 71.6 83 51.8
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 3.9e-11 71.2 84 51.2
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 3.9e-11 71.2 88 50.0
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 8.7e-11 70.1 86 52.3
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.1e-10 69.7 83 53.0
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.1e-10 69.7 74 54.1
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 1.9e-10 68.9 76 53.9
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 1.9e-10 68.9 81 49.4
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 1.9e-10 68.9 86 52.3
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.9e-10 68.9 91 53.8
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 2.5e-10 68.6 76 52.6
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 2.5e-10 68.6 76 52.6
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 2.5e-10 68.6 76 48.7
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 2.5e-10 68.6 91 49.5
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 4.3e-10 67.8 84 51.2
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 4.3e-10 67.8 88 44.3
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 5.6e-10 67.4 76 51.3
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 5.6e-10 67.4 33 87.9
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 5.6e-10 67.4 33 87.9
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 7.4e-10 67.0 81 48.1
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 7.4e-10 67.0 76 43.4
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 7.4e-10 67.0 76 43.4
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 7.4e-10 67.0 89 50.6
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 7.4e-10 67.0 85 47.1
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 9.6e-10 66.6 89 46.1
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 1.3e-09 66.2 81 51.9
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.3e-09 66.2 76 43.4
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 1.3e-09 66.2 90 51.1
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 1.6e-09 65.9 88 50.0
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 2.1e-09 65.5 81 46.9
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 2.1e-09 65.5 33 87.9
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 2.1e-09 65.5 34 85.3
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.8e-09 65.1 71 52.1
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 3.7e-09 64.7 81 46.9
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 4.8e-09 64.3 78 53.8
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 6.2e-09 63.9 80 46.2
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.1e-08 63.2 84 48.8
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 1.1e-08 63.2 91 49.5
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 1.1e-08 63.2 80 48.8
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 1.4e-08 62.8 78 44.9
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 1.8e-08 62.4 79 50.6
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 1.8e-08 62.4 77 48.1
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 3.1e-08 61.6 33 81.8
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 4.0e-08 61.2 33 84.8
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 1.5e-07 59.3 77 41.6
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 1.5e-07 59.3 77 41.6
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 2.0e-07 58.9 77 41.6
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 2.0e-07 58.9 77 41.6
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 2.6e-07 58.5 71 57.7
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 2.6e-07 58.5 60 50.0
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 3.4e-07 58.2 94 41.5
BolC3t20851H Brassica oleracea HOM05D006691 ORTHO05D007620 3.4e-07 58.2 81 40.7
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 4.5e-07 57.8 77 44.2
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 5.8e-07 57.4 33 75.8
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 7.6e-07 57.0 30 83.3
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 7.6e-07 57.0 77 41.6
Os11g0323860 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 7.6e-07 57.0 82 40.2
Os11g0412484 Oryza sativa ssp. japonica HOM05D035858 ORTHO05D007620 7.6e-07 57.0 82 40.2
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 9.9e-07 56.6 97 38.1
DCAR_004781 Daucus carota HOM05D006691 ORTHO05D007620 2.2e-06 55.5 35 68.6
Lalb_Chr03g0032901 Lupinus albus HOM05D006691 ORTHO05D007620 8.4e-06 53.5 32 65.6


User provided reference genes

Program Settings