Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.2e-309 1063.9 559 100.0
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 4.4e-274 947.6 559 89.3
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 7.0e-272 940.3 559 87.7
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.3e-262 909.4 559 85.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 8.7e-198 694.1 554 68.2
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.9e-197 693.0 565 66.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 5.6e-197 691.4 554 67.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.4e-195 686.8 561 65.2
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.4e-192 676.8 566 66.4
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.4e-192 676.0 565 66.0
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 1.8e-190 669.8 559 66.0
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 5.1e-190 668.3 554 63.9
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.1e-189 667.2 554 63.9
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.3e-189 665.2 554 63.5
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 6.2e-188 661.4 560 63.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 6.2e-188 661.4 558 65.6
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.1e-187 660.6 560 63.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.8e-187 659.8 570 64.2
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 4.0e-187 658.7 562 63.3
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 5.3e-187 658.3 562 63.3
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 9.0e-187 657.5 565 63.4
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.6e-186 654.4 561 63.5
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.9e-184 649.8 562 63.0
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.6e-183 646.7 562 62.8
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 2.1e-183 646.4 563 63.2
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.6e-183 645.2 566 62.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 6.0e-183 644.8 571 60.8
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 7.9e-183 644.4 556 63.5
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 3.9e-182 642.1 563 62.9
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 5.7e-181 638.3 562 61.4
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 7.4e-181 637.9 567 62.6
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 7.4e-181 637.9 556 63.1
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-180 635.6 559 62.4
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 8.2e-180 634.4 553 62.6
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.8e-179 633.3 563 62.2
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.7e-177 626.7 556 61.3
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.9e-177 625.9 559 61.2
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 3.8e-177 625.5 567 61.2
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.2e-175 620.5 569 59.8
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.1e-174 615.1 559 60.3
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 5.1e-174 615.1 560 61.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 6.7e-174 614.8 563 60.0
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-173 613.6 575 59.3
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 3.3e-173 612.5 554 61.7
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.3e-173 612.1 575 59.3
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 5.7e-173 611.7 565 61.2
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 9.7e-173 610.9 555 60.9
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.7e-172 610.1 561 61.0
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-172 609.8 575 59.0
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 3.7e-172 609.0 560 60.2
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.1e-171 607.4 562 60.1
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-171 607.1 563 60.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.4e-171 607.1 561 61.1
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 1.8e-171 606.7 557 59.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 6.9e-171 604.7 560 61.2
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 9.1e-171 604.4 559 59.9
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.2e-170 604.0 555 60.7
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-169 600.5 564 59.2
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.7e-169 600.1 572 58.4
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-168 597.4 665 53.1
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 3.2e-168 595.9 557 59.6
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.2e-168 595.5 570 56.8
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 5.5e-168 595.1 564 58.7
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 7.2e-168 594.7 564 58.9
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.6e-167 593.6 564 59.0
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.8e-166 590.1 562 59.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.3e-165 585.9 553 58.2
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 9.7e-165 584.3 564 57.1
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-164 583.6 556 57.4
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 8.2e-164 581.3 555 58.6
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-163 580.9 564 56.9
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 5.3e-163 578.6 555 60.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.9e-162 575.1 551 55.9
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 5.9e-162 575.1 558 58.8
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.7e-161 573.5 565 57.9
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.9e-161 572.8 556 56.8
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.1e-160 570.9 573 56.7
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 4.2e-160 568.9 548 57.8
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 5.5e-160 568.5 555 57.5
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 5.5e-160 568.5 573 57.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.6e-159 567.0 555 57.1
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.4e-158 563.9 563 58.1
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 2.4e-155 553.1 582 53.6
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 9.1e-155 551.2 567 54.7
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 2.0e-154 550.1 569 54.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.0e-154 550.1 564 56.4
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 8.5e-153 544.7 578 53.6
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.5e-152 543.9 566 54.6
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 3.2e-152 542.7 559 54.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 5.5e-152 542.0 561 56.0
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.7e-151 538.9 582 52.1
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 6.7e-150 535.0 577 53.4
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.2e-149 534.3 563 54.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.3e-149 532.7 563 53.8
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.4e-149 532.3 565 53.6
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 8.3e-148 528.1 568 53.2
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.4e-147 526.6 563 55.2
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 5.3e-147 525.4 558 53.8
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.8e-142 508.1 449 59.9
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 4.1e-139 499.2 546 51.8
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 3.5e-138 496.1 576 50.3
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.1e-136 491.1 559 52.8
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 5.0e-129 465.7 559 50.4
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-127 461.1 420 61.7
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 5.2e-126 455.7 551 45.6
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.8e-126 455.3 504 53.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 6.4e-124 448.7 416 62.0
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.8e-122 441.8 528 50.4
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 7.3e-120 435.3 567 46.9
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.6e-119 433.0 425 59.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 5.4e-115 419.1 565 43.7
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 4.0e-110 402.9 283 72.4
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.9e-110 401.7 303 69.0
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 5.8e-109 399.1 560 42.9
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 8.3e-108 395.2 372 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.2e-103 381.3 561 41.4
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.7e-100 370.9 552 42.0
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.5e-90 336.7 388 50.5
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 2.8e-87 327.0 465 44.5
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 4.9e-84 316.2 496 43.5
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.3e-81 307.4 308 56.2
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 3.9e-81 306.6 464 43.5
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.9e-72 277.7 344 49.7
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.7e-66 257.3 173 72.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 7.4e-64 249.2 405 39.5
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-62 244.6 190 65.3
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-60 235.7 493 37.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.5e-53 213.4 233 54.5
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.7e-52 211.5 170 61.2
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-42 176.8 139 66.2
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 8.0e-42 176.0 138 63.8
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.0e-41 174.1 139 60.4
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-41 172.9 312 40.7
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.7e-40 169.9 143 64.3
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-35 154.1 118 66.1
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 3.6e-34 150.6 118 64.4
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-26 124.4 175 46.3
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.4e-25 122.1 112 57.1
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-23 114.4 86 68.6
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.5e-21 107.5 282 33.3
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 4.5e-21 107.1 88 65.9
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 9.5e-19 99.4 102 45.1
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 5.7e-16 90.1 60 68.3
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.1e-11 75.9 66 62.1
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-09 69.3 42 73.8
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-09 68.6 167 36.5
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 6.8e-09 66.6 48 70.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-07 62.4 52 65.4
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.7e-07 62.0 59 50.8
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-06 58.2 39 71.8
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.4e-06 57.0 46 60.9
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 7.0e-06 56.6 182 30.2


User provided reference genes

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