Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 8.3e-185 650.2 323 100.0
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.2e-138 496.9 321 80.4
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.6e-135 486.5 321 78.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 5.1e-118 428.3 321 70.7
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 4.8e-116 421.8 317 70.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 9.1e-115 417.5 321 67.9
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 5.9e-114 414.8 321 67.6
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.8e-113 412.1 321 66.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 8.5e-113 411.0 312 67.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.0e-110 404.1 297 70.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.8e-110 403.3 303 68.0
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 6.7e-110 401.4 304 68.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 8.8e-110 401.0 303 68.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-110 401.0 302 68.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.5e-109 400.2 303 68.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-109 399.4 306 67.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.3e-109 399.1 309 67.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.3e-108 397.1 303 67.7
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.3e-108 397.1 305 67.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.7e-108 396.7 319 66.8
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.2e-108 396.4 298 68.1
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.8e-108 395.2 296 69.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.3e-108 394.8 303 67.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.2e-108 394.4 317 65.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.1e-107 392.1 290 69.7
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 5.3e-107 391.7 307 66.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 7.0e-107 391.3 282 71.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.6e-106 390.2 319 66.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.6e-106 389.4 293 67.6
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.6e-106 389.4 303 66.3
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.5e-106 389.0 301 67.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.5e-106 389.0 294 68.4
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 4.5e-106 388.7 294 68.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.9e-106 388.3 323 63.8
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.9e-105 386.0 299 66.2
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.9e-105 386.0 299 65.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.9e-105 386.0 299 65.9
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.8e-105 385.6 299 66.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.0e-105 385.2 309 65.0
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.5e-104 383.6 299 65.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.9e-104 383.3 299 66.6
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 4.2e-104 382.1 299 65.2
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 7.2e-104 381.3 288 68.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 9.4e-104 380.9 321 63.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.6e-103 379.0 292 67.5
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 8.0e-103 377.9 315 63.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 8.0e-103 377.9 307 65.1
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.0e-102 377.5 308 65.3
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.4e-102 377.1 296 65.5
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.3e-102 376.3 296 65.5
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.0e-102 375.6 310 63.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.0e-102 375.6 302 64.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 5.2e-102 375.2 294 65.6
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 5.2e-102 375.2 296 65.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 5.2e-102 375.2 296 65.2
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 5.2e-102 375.2 294 65.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.2e-101 374.0 293 65.5
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.2e-101 374.0 401 53.6
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-101 372.1 294 66.3
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 7.5e-101 371.3 318 62.6
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.5e-98 362.5 313 62.0
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 3.5e-98 362.5 321 60.4
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 5.9e-98 361.7 306 61.8
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 5.9e-98 361.7 297 64.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 5.9e-98 361.7 291 63.6
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.7e-97 360.1 339 60.2
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.0e-97 358.6 313 61.0
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.1e-96 357.5 303 62.7
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.5e-96 357.1 293 61.4
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.5e-96 356.3 297 62.6
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 4.2e-96 355.5 297 62.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 4.2e-96 355.5 297 62.0
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.6e-95 352.4 290 62.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 8.0e-95 351.3 293 62.5
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.0e-94 350.9 302 60.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 3.0e-94 349.4 309 59.9
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 6.8e-94 348.2 303 61.4
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 8.8e-94 347.8 301 61.8
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.5e-93 347.1 301 60.5
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 5.7e-93 345.1 301 60.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.2e-92 343.2 292 62.3
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.8e-92 342.8 318 58.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.8e-91 340.1 301 60.1
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.4e-91 339.7 315 58.7
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.1e-91 339.3 285 62.5
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 4.7e-87 325.5 252 66.7
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.8e-83 313.5 253 64.8
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.1e-83 312.4 319 57.1
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 9.2e-83 311.2 319 56.7
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.2e-82 310.8 169 87.0
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 5.9e-82 308.5 172 84.3
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.3e-81 307.4 316 53.5
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.0e-78 297.7 303 54.1
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.0e-78 296.2 309 53.7
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 8.9e-78 294.7 318 52.5
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.9e-76 289.7 299 54.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.7e-74 283.1 299 52.2
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.0e-73 281.2 285 55.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.6e-72 275.4 299 51.5
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.3e-72 275.0 303 50.8
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 9.5e-72 274.6 309 50.5
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.0e-70 269.2 298 51.3
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 8.9e-70 268.1 317 49.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 8.3e-68 261.5 301 47.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 4.6e-66 255.8 297 49.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.3e-64 249.6 321 48.3
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 4.0e-62 242.7 295 49.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-60 237.3 210 60.5
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.0e-57 226.5 367 44.1
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.1e-55 220.3 200 59.0
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 3.1e-54 216.5 331 41.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.6e-50 204.1 216 55.1
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.5e-48 196.8 285 42.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 3.6e-47 193.0 321 38.0
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.0e-46 189.5 265 43.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.0e-41 173.3 132 65.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 5.3e-38 162.5 297 35.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 7.1e-35 152.1 85 83.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.0e-34 149.1 156 53.8
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-30 137.5 204 43.6
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.6e-29 132.1 76 82.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-28 130.2 131 54.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-21 106.7 143 44.8
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.8e-20 103.2 84 60.7
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 2.2e-15 87.4 84 57.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.8e-14 84.3 47 80.9
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.1e-14 83.2 168 33.3
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.0e-13 80.9 39 89.7
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-11 73.6 37 91.9
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-11 73.6 37 91.9
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.2e-10 71.6 92 45.7
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 5.1e-09 66.2 66 51.5
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 3.1e-06 57.0 40 62.5


User provided reference genes

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