Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 8.3e-35 149.8 76 100.0
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.2e-30 136.0 72 94.4
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 8.0e-30 133.3 77 90.9
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 3.5e-25 117.9 62 95.2
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 4.6e-25 117.5 78 76.9
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 7.8e-25 116.7 78 76.9
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.0e-24 116.3 78 78.2
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.1e-23 112.8 72 75.0
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.1e-23 112.8 80 73.8
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 4.3e-23 110.9 78 73.1
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 4.3e-23 110.9 71 80.3
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 5.6e-23 110.5 76 73.7
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 5.6e-23 110.5 76 73.7
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 9.5e-23 109.8 78 69.2
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.6e-22 109.0 76 72.4
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.6e-22 109.0 76 72.4
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 1.6e-22 109.0 76 72.4
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 2.1e-22 108.6 76 72.4
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 2.8e-22 108.2 78 71.8
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 3.6e-22 107.8 76 71.1
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.6e-22 107.8 71 74.6
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.1e-21 106.3 80 70.0
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.4e-21 105.9 77 70.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.4e-21 105.9 86 66.3
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.4e-21 105.9 78 70.5
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 1.4e-21 105.9 78 70.5
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 2.3e-21 105.1 77 70.1
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 3.1e-21 104.8 74 71.6
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.2e-20 102.8 74 68.9
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 1.5e-20 102.4 78 66.7
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.0e-20 102.1 80 66.2
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.4e-20 100.9 77 67.5
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 4.4e-20 100.9 78 66.7
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 4.4e-20 100.9 78 66.7
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 5.8e-20 100.5 78 64.1
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 7.5e-20 100.1 73 67.1
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.3e-19 99.4 72 70.8
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.3e-19 99.4 72 69.4
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.7e-19 99.0 76 63.2
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 2.2e-19 98.6 57 82.5
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.2e-19 98.6 68 75.0
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 2.9e-19 98.2 61 72.1
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.9e-19 98.2 80 67.5
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 3.7e-19 97.8 69 68.1
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-19 97.4 68 73.5
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 6.4e-19 97.1 69 69.6
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 8.3e-19 96.7 60 75.0
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 8.3e-19 96.7 69 66.7
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.4e-18 95.9 71 67.6
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.9e-18 95.5 77 63.6
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.2e-18 94.7 62 77.4
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 4.1e-18 94.4 63 74.6
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 4.1e-18 94.4 63 74.6
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 9.2e-18 93.2 63 73.0
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 9.2e-18 93.2 68 70.6
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.2e-17 92.8 72 63.9
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 1.6e-17 92.4 75 58.7
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 2.7e-17 91.7 68 67.6
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 4.6e-17 90.9 77 61.0
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 4.6e-17 90.9 69 65.2
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 4.6e-17 90.9 63 71.4
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 6.0e-17 90.5 67 67.2
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 6.0e-17 90.5 67 67.2
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 6.0e-17 90.5 68 66.2
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 6.0e-17 90.5 72 66.7
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 6.0e-17 90.5 72 62.5
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.0e-16 89.7 68 66.2
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.0e-16 89.7 67 65.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.3e-16 89.4 74 60.8
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.3e-16 89.4 68 69.1
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 2.3e-16 88.6 69 66.7
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 3.9e-16 87.8 65 66.2
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 5.1e-16 87.4 62 69.4
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 6.6e-16 87.0 68 63.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.1e-15 86.3 59 71.2
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.5e-15 85.9 63 71.4
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 1.5e-15 85.9 68 64.7
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 1.9e-15 85.5 66 66.7
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.9e-15 85.5 66 62.1
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.9e-15 85.5 62 67.7
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.5e-15 85.1 52 75.0
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 2.5e-15 85.1 68 67.6
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 3.3e-15 84.7 74 62.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 7.3e-15 83.6 66 62.1
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.7e-14 80.9 66 60.6
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 4.7e-14 80.9 66 60.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 8.1e-14 80.1 64 62.5
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.4e-13 79.3 57 71.9
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.8e-13 79.0 70 58.6
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.8e-13 79.0 68 60.3
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 2.4e-13 78.6 64 64.1
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-13 78.6 64 64.1
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-13 78.6 64 64.1
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.4e-13 78.6 64 64.1
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.4e-13 78.6 74 59.5
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 6.8e-13 77.0 68 60.3
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 1.5e-12 75.9 68 61.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 6.4e-11 70.5 43 74.4
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.1e-10 69.7 80 48.8
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 3.2e-10 68.2 82 50.0
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 5.4e-10 67.4 43 76.7
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.6e-07 57.4 30 86.7
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 5.6e-07 57.4 37 67.6
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 6.2e-06 53.9 52 50.0


User provided reference genes

Program Settings