Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 7.2e-102 374.0 203 100.0
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.0e-85 317.4 205 89.8
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.4e-83 311.6 206 85.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.5e-70 270.0 206 72.8
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 7.6e-59 231.1 207 65.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.9e-41 173.3 218 58.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.2e-40 170.6 210 52.9
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.6e-40 170.2 213 52.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 6.7e-39 164.9 224 50.4
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.3e-37 160.6 216 54.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.1e-37 159.8 210 51.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.7e-37 159.1 213 49.8
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.1e-36 156.0 211 49.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.1e-36 156.0 207 48.8
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.5e-35 153.7 212 50.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 3.4e-35 152.5 207 48.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.7e-34 150.2 210 48.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.9e-34 149.4 209 55.0
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.8e-34 149.1 215 52.6
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.4e-34 147.9 208 44.2
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.1e-33 147.5 212 52.8
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.9e-33 146.7 213 54.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.5e-33 146.4 212 45.3
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.5e-33 146.4 217 49.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.2e-33 145.6 212 55.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.5e-33 145.2 205 54.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.2e-32 144.1 210 49.5
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-32 143.7 216 45.8
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.6e-32 143.7 216 45.8
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-32 143.3 212 51.9
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.1e-32 143.3 219 51.6
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.7e-32 142.9 211 52.6
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.7e-32 142.9 212 46.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.6e-32 142.1 223 52.5
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.6e-32 142.1 212 51.4
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.6e-32 142.1 214 56.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.3e-31 139.8 219 53.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.0e-31 139.4 223 49.8
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.1e-30 137.5 207 49.8
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.9e-30 136.7 208 48.6
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.3e-30 136.0 208 51.0
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.3e-30 135.6 209 45.0
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.3e-29 134.0 210 46.2
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.1e-29 133.3 219 48.9
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 2.8e-29 132.9 212 45.3
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 6.3e-29 131.7 169 45.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.3e-29 131.7 208 46.2
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.4e-28 130.6 211 52.6
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.8e-28 130.2 213 47.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 3.1e-28 129.4 204 44.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.1e-28 129.0 211 46.0
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 4.1e-28 129.0 218 45.4
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 9.0e-28 127.9 213 49.8
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.2e-27 127.5 211 51.7
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.5e-27 127.1 207 44.0
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.5e-27 127.1 213 45.1
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.5e-27 127.1 213 44.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.0e-27 126.7 217 41.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 2.6e-27 126.3 236 40.3
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.4e-27 125.9 213 47.4
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 3.4e-27 125.9 210 45.7
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 4.5e-27 125.6 207 49.3
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 4.5e-27 125.6 214 50.9
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 5.9e-27 125.2 214 47.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.0e-26 124.4 213 43.7
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.3e-26 124.0 208 43.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.3e-26 124.0 211 50.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.7e-26 123.6 222 43.7
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.2e-26 123.2 215 42.8
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 8.4e-26 121.3 208 50.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 4.2e-25 119.0 220 40.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 4.2e-25 119.0 204 46.6
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.6e-24 117.1 170 51.8
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-24 117.1 213 43.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.7e-24 116.3 209 41.6
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 4.6e-24 115.5 167 52.1
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.3e-23 114.0 220 44.5
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-23 113.6 210 42.9
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-23 113.6 174 46.6
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.3e-23 113.2 227 48.5
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 3.0e-23 112.8 216 40.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.0e-23 112.8 218 48.6
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.0e-23 112.8 208 47.6
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.1e-23 112.1 211 41.7
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.1e-23 112.1 208 41.3
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 6.7e-23 111.7 218 41.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.7e-23 111.7 219 38.8
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.7e-23 111.3 218 46.8
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.1e-22 110.9 211 45.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.5e-22 110.5 209 39.7
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-22 110.5 209 39.7
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.5e-22 110.5 203 39.4
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-22 110.2 209 41.1
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.9e-22 110.2 213 43.2
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.7e-22 108.6 225 42.7
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 5.7e-22 108.6 212 42.9
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 7.4e-22 108.2 211 47.4
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 7.4e-22 108.2 210 42.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 7.4e-22 108.2 175 42.9
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 7.4e-22 108.2 212 46.2
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.3e-21 107.5 211 40.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.2e-21 106.7 211 40.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-21 106.3 210 39.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.7e-21 105.9 209 38.8
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.7e-21 105.9 209 38.8
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.8e-21 105.5 139 50.4
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-21 105.5 210 40.5
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 8.2e-21 104.8 213 43.2
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.4e-20 103.2 211 38.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-20 102.8 206 37.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.1e-20 102.8 206 37.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.1e-20 102.8 206 36.9
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 9.0e-20 101.3 206 37.4
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 9.0e-20 101.3 206 37.4
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 2.0e-19 100.1 222 39.2
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.4e-19 99.4 197 40.6
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.0e-18 97.8 178 43.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.0e-18 97.8 165 40.0
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.2e-18 96.7 217 42.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.2e-18 96.7 208 37.0
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 2.9e-18 96.3 202 38.1
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.8e-18 95.9 167 39.5
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 3.8e-18 95.9 221 44.8
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.1e-17 94.4 205 43.9
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-17 94.4 211 43.6
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-17 94.4 211 43.6
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 7.2e-17 91.7 183 48.6
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 9.4e-17 91.3 162 45.7
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.6e-16 90.5 126 46.0
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.1e-16 90.1 149 43.6
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-16 90.1 157 44.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 4.6e-16 89.0 163 42.3
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.1e-16 88.6 205 37.6
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.0e-15 87.8 174 48.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.4e-15 87.4 163 39.9
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.8e-15 87.0 186 37.1
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.8e-15 87.0 170 37.6
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.8e-15 87.0 136 45.6
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.0e-15 86.3 164 38.4
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-15 86.3 204 37.3
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-15 86.3 168 36.9
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.1e-15 85.5 92 55.4
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 5.1e-15 85.5 212 37.3
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-14 82.4 165 37.6
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.3e-14 82.4 166 36.7
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 4.3e-14 82.4 207 41.5
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 7.4e-14 81.6 153 43.1
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 7.4e-14 81.6 170 37.1
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 7.4e-14 81.6 170 37.1
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-13 80.5 207 35.7
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-13 79.0 222 34.7
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-13 78.6 207 33.3
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 8.2e-13 78.2 209 33.5
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.4e-12 77.4 155 36.8
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 2.6e-11 73.2 209 34.9
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-11 72.8 205 36.1
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 4.5e-11 72.4 162 36.4
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 5.9e-11 72.0 101 46.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.3e-10 70.9 117 46.2
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.3e-10 70.9 142 39.4
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 2.9e-10 69.7 109 42.2
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 2.9e-10 69.7 160 34.4
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 3.8e-10 69.3 128 51.6
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 7.2e-09 65.1 120 43.3
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 9.4e-09 64.7 195 35.9
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.1e-08 63.5 205 37.1
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 2.7e-08 63.2 107 45.8
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.8e-07 60.5 126 38.9
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.8e-07 60.5 174 32.2
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-07 60.1 36 72.2
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.1e-07 58.9 158 34.2
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 1.1e-06 57.8 190 34.7
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 4.4e-06 55.8 73 47.9
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.4e-06 55.8 216 30.1
Ah.09g230910 Amaranthus hybridus HOM05D003644 ORTHO05D004305 5.7e-06 55.5 92 39.1


User provided reference genes

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