Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.9e-267 925.2 465 100.0
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.5e-251 871.7 465 94.4
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 3.0e-228 795.0 465 86.2
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 4.6e-176 621.7 464 66.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 8.3e-170 600.9 464 64.0
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.6e-168 596.7 464 65.1
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.6e-168 596.7 465 63.7
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.1e-164 583.9 464 63.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 8.9e-164 580.9 464 61.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-163 580.5 467 63.4
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.5e-163 580.1 464 62.3
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 4.4e-163 578.6 463 64.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 6.4e-162 574.7 466 61.8
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 7.1e-161 571.2 467 62.5
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.0e-159 567.4 466 61.8
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.6e-159 564.7 466 61.8
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 6.6e-159 564.7 466 61.8
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.5e-158 562.8 463 60.7
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.3e-158 562.4 465 60.6
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 7.3e-158 561.2 466 60.7
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 7.3e-158 561.2 466 61.2
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.2e-157 560.5 464 61.6
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.6e-157 560.1 464 60.1
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.8e-157 559.3 467 61.7
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 3.6e-157 558.9 466 61.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 8.9e-156 554.3 466 59.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 8.9e-156 554.3 465 58.7
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 8.9e-156 554.3 466 60.9
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.5e-155 553.5 463 58.5
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.0e-155 553.1 515 57.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 5.8e-155 551.6 465 59.8
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 9.9e-155 550.8 464 59.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.3e-154 550.4 464 59.9
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 6.4e-154 548.1 463 60.9
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.9e-153 546.6 465 59.4
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.2e-153 545.8 465 59.8
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 7.1e-153 544.7 466 57.9
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.2e-152 543.9 465 60.0
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.7e-152 542.7 286 95.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 7.8e-152 541.2 463 60.3
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.0e-151 540.8 465 59.4
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.3e-151 539.7 465 59.6
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.9e-151 538.9 462 59.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.3e-150 535.4 465 59.8
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 2.1e-149 533.1 464 57.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.8e-149 532.7 464 57.1
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 4.8e-149 531.9 467 57.0
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 3.4e-147 525.8 466 59.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 2.9e-146 522.7 467 57.4
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.1e-145 520.8 467 56.7
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 4.2e-145 518.8 467 54.8
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.0e-143 514.2 468 54.7
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.0e-143 514.2 468 56.0
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.7e-143 513.5 500 56.0
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 2.3e-143 513.1 465 57.6
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.7e-143 511.1 459 57.7
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.1e-142 510.8 468 54.5
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.5e-142 510.4 464 57.8
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.3e-142 508.8 436 59.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 5.6e-142 508.4 468 54.3
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 5.6e-142 508.4 465 57.4
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 7.3e-142 508.1 468 54.1
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 9.6e-142 507.7 464 57.3
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-141 506.9 468 54.5
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.6e-141 506.9 466 56.4
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.8e-141 506.1 466 54.5
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 3.6e-141 505.8 463 54.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 6.2e-141 505.0 467 54.8
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.1e-140 504.2 465 55.9
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.4e-140 503.8 463 54.6
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.4e-140 503.8 466 54.1
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 2.4e-140 503.1 466 54.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 4.0e-140 502.3 466 54.5
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.0e-140 502.3 469 54.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.6e-139 499.6 466 53.2
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 2.2e-138 496.5 464 55.0
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.1e-137 494.2 464 54.7
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.4e-137 493.8 467 53.3
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.4e-137 493.0 466 54.7
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.2e-137 492.7 463 55.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.2e-136 490.7 423 59.6
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.2e-136 490.7 462 54.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.2e-136 490.7 466 54.5
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 9.6e-134 481.1 468 53.2
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 3.7e-133 479.2 467 54.0
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 4.8e-133 478.8 467 54.0
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.4e-132 476.5 470 52.8
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.4e-132 476.5 467 53.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-130 470.3 468 53.0
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.0e-127 461.1 426 55.4
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 8.7e-127 458.0 465 51.6
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.7e-122 443.7 469 50.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.7e-122 443.7 468 51.5
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.2e-121 439.5 468 50.9
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 9.3e-121 438.0 426 54.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 6.7e-119 431.8 497 48.5
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.9e-118 430.3 495 47.1
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.3e-118 429.1 469 47.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.2e-117 426.8 466 48.5
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 3.1e-116 422.9 431 53.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 9.0e-116 421.4 452 49.1
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 3.4e-115 419.5 460 48.5
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.3e-109 401.0 466 45.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.5e-107 392.5 439 47.6
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 3.9e-103 379.4 468 44.4
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.2e-93 347.1 427 44.5
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 4.8e-93 345.9 303 58.7
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.2e-89 333.2 383 46.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 9.4e-89 331.6 386 46.1
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.1e-84 316.6 363 48.5
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 7.2e-81 305.4 473 37.8
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 8.8e-79 298.5 503 36.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 3.5e-75 286.6 533 36.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.4e-63 248.1 499 32.1
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 6.2e-56 222.6 537 31.7
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 3.4e-54 216.9 324 41.4
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.0e-42 178.7 379 30.9
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.3e-37 161.8 192 44.8
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.8e-37 160.2 112 66.1
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.1e-36 158.7 363 32.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 4.2e-36 156.8 162 48.8
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.6e-35 154.8 162 48.1
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.4e-30 137.1 104 62.5
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 4.5e-30 136.7 407 29.2
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 5.8e-30 136.3 126 55.6
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.1e-28 132.1 218 39.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.4e-28 131.0 237 35.4
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 7.9e-27 125.9 128 43.8
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 7.9e-27 125.9 128 43.8
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.7e-26 122.9 450 25.6
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-25 121.7 125 43.2
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 3.3e-25 120.6 314 28.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.3e-18 98.6 124 42.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.6e-16 91.7 169 37.3
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 3.0e-10 70.9 88 42.0
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 3.9e-10 70.5 67 50.7
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 3.3e-09 67.4 39 79.5
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.8e-08 63.5 40 72.5
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.3e-08 63.2 65 49.2
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 5.9e-06 56.6 73 39.7
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.0e-05 55.8 40 67.5


User provided reference genes

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