Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G001750 Citrullus lanatus HOM05D007990 ORTHO05D009984 1.0e-85 320.1 169 100.0
MELO3C004625.2 Cucumis melo HOM05D007990 ORTHO05D009984 2.4e-66 255.8 174 82.2
CsaV3_2G001460 Cucumis sativus L. HOM05D007990 ORTHO05D009984 8.8e-61 237.3 168 78.0
Sed0000223 Sechium edule HOM05D007990 ORTHO05D009984 5.5e-47 191.4 176 64.8
Gohir.A07G011300 Gossypium hirsutum HOM05D007990 ORTHO05D009984 3.0e-24 115.9 186 45.2
TWI63G1466 Tripterygium wilfordii HOM05D007990 ORTHO05D009984 1.5e-23 113.6 175 42.3
TWI32G0510 Tripterygium wilfordii HOM05D007990 ORTHO05D009984 7.3e-23 111.3 176 42.6
Gohir.D07G011200 Gossypium hirsutum HOM05D007990 ORTHO05D009984 9.5e-23 110.9 185 43.2
Gorai.001G011900 Gossypium raimondii HOM05D007990 ORTHO05D009984 9.5e-23 110.9 185 43.2
Thecc.09G089300 Theobroma cacao HOM05D007990 ORTHO05D009984 1.6e-22 110.2 160 45.0
Ciclev10010560m.g Citrus clementina HOM05D007990 ORTHO05D009984 2.8e-22 109.4 171 43.9
CiPaw.03G215900 Carya illinoinensis HOM05D007990 ORTHO05D009984 8.0e-22 107.8 170 43.5
COL.COLO4_18199 Corchorus olitorius HOM05D007990 ORTHO05D009984 8.0e-22 107.8 164 45.7
Hma1.2p1_2664F.1_g326450 Hydrangea macrophylla HOM05D007990 ORTHO05D009984 1.1e-21 107.5 119 58.8
Duzib168G0718 Durio zibethinus HOM05D007990 ORTHO05D009984 2.3e-21 106.3 174 42.0
Hma1.2p1_0798F.1_g219830 Hydrangea macrophylla HOM05D007990 ORTHO05D009984 4.0e-21 105.5 191 44.5
Dinv36767 Davidia involucrata HOM05D007990 ORTHO05D009984 1.2e-20 104.0 176 43.2
Manes.03G033800 Manihot esculenta HOM05D007990 ORTHO05D009984 2.0e-20 103.2 121 52.9
Gohir.A06G072600 Gossypium hirsutum HOM05D007990 ORTHO05D009984 2.2e-19 99.8 180 38.9
Cc06_g11410 Coffea canephora HOM05D007990 ORTHO05D009984 2.4e-18 96.3 116 48.3
Gorai.010G083000 Gossypium raimondii HOM05D007990 ORTHO05D009984 7.0e-18 94.7 151 43.0
Migut.J00619 Erythranthe guttata HOM05D007990 ORTHO05D009984 2.1e-17 93.2 142 46.5
Atru.chr7.1590 Acer truncatum HOM05D007990 ORTHO05D009984 3.5e-17 92.4 126 48.4
Gohir.D06G071200 Gossypium hirsutum HOM05D007990 ORTHO05D009984 3.5e-17 92.4 151 41.7
QL02p062610 Quercus lobata HOM05D007990 ORTHO05D009984 1.0e-16 90.9 156 43.6
SGA_v2.0_scaffold62G21609 Striga asiatica HOM05D007990 ORTHO05D009984 1.0e-16 90.9 91 56.0
Nitab4.5_0004526g0040 Nicotiana tabacum HOM05D007990 ORTHO05D009984 6.6e-16 88.2 138 41.3
Cfa003085 Carpinus fangiana HOM05D007990 ORTHO05D009984 8.6e-16 87.8 155 39.4
Haze_25914 Corylus avellana HOM05D007990 ORTHO05D009984 8.6e-16 87.8 152 40.1
Oeu041221.1 Olea europaea HOM05D007990 ORTHO05D009984 2.5e-15 86.3 84 59.5
Nitab4.5_0006552g0010 Nicotiana tabacum HOM05D007990 ORTHO05D009984 3.3e-15 85.9 140 40.7
Lj4g0018248 Lotus japonicus HOM05D007990 ORTHO05D009984 7.3e-15 84.7 96 53.1
Sp6g18600 Schrenkiella parvula HOM05D007990 ORTHO05D009984 7.3e-15 84.7 136 39.7
CANSAT56G4255 Cannabis sativa HOM05D007990 ORTHO05D009984 1.2e-14 84.0 145 43.4
Actinidia29902 Actinidia chinensis HOM05D007990 ORTHO05D009984 1.6e-14 83.6 92 57.6
AL8G32730 Arabidopsis lyrata HOM05D007990 ORTHO05D009984 6.2e-14 81.6 100 49.0
Thhalv10015576m.g Eutrema salsugineum HOM05D007990 ORTHO05D009984 8.1e-14 81.3 173 34.1
Lj7P676T16 Lonicera japonica HOM05D007990 ORTHO05D009984 1.1e-13 80.9 79 57.0
FAN19G1041 Fragaria x ananassa HOM05D023113 ORTHO05D009984 4.0e-13 79.0 136 40.4
AT5G56880 Arabidopsis thaliana HOM05D007990 ORTHO05D009984 5.2e-13 78.6 151 37.7
DCAR_028590 Daucus carota HOM05D007990 ORTHO05D009984 5.2e-13 78.6 181 34.8
FvH4_1g07430 Fragaria vesca HOM05D023113 ORTHO05D009984 6.8e-13 78.2 132 41.7
Ah.09g228280 Amaranthus hybridus HOM05D007990 ORTHO05D009984 8.9e-13 77.8 74 52.7
FAN28G0129 Fragaria x ananassa HOM05D023113 ORTHO05D009984 1.2e-12 77.4 128 40.6
Medtr4g126310 Medicago truncatula HOM05D007990 ORTHO05D009984 1.2e-12 77.4 74 60.8
Rhsim03G0232200 Rhododendron simsii HOM05D007990 ORTHO05D009984 2.0e-12 76.6 121 45.5
FAN26G2796 Fragaria x ananassa HOM05D023113 ORTHO05D009984 3.4e-12 75.9 128 39.8
THA.LOC104813262 Tarenaya hassleriana HOM05D007990 ORTHO05D009984 3.4e-12 75.9 180 36.7
BolC3t13974H Brassica oleracea HOM05D007990 ORTHO05D009984 4.4e-12 75.5 177 33.9
Sc18g0001980 Simmondsia chinensis HOM05D007990 ORTHO05D009984 4.4e-12 75.5 115 47.8
BcaB01g04425 Brassica carinata HOM05D007990 ORTHO05D009984 7.5e-12 74.7 176 33.5
Prupe.7G209700 Prunus persica HOM05D007990 ORTHO05D009984 7.5e-12 74.7 165 38.2
TAR383G0124 Trochodendron aralioides HOM05D009710 ORTHO05D011230 7.5e-12 74.7 117 45.3
BcaB08g36048 Brassica carinata HOM05D007990 ORTHO05D009984 1.3e-11 73.9 169 34.9
Carub.0008s1734 Capsella rubella HOM05D007990 ORTHO05D009984 1.3e-11 73.9 134 40.3
DCAR_032237 Daucus carota HOM05D007990 ORTHO05D009984 1.3e-11 73.9 156 38.5
CARHR270630 Cardamine hirsuta HOM05D007990 ORTHO05D009984 1.7e-11 73.6 166 39.2
C03p15320 Brassica napus HOM05D007990 ORTHO05D009984 2.2e-11 73.2 177 34.5
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 2.9e-11 72.8 53 67.9
Lsat_1_v5_gn_5_142501 Lactuca sativa HOM05D007990 ORTHO05D009984 3.7e-11 72.4 148 37.8
FAN26G0609 Fragaria x ananassa HOM05D023113 ORTHO05D009984 6.4e-11 71.6 128 38.3
HanXRQChr10g0319321 Helianthus annuus HOM05D007990 ORTHO05D009984 6.4e-11 71.6 151 39.1
A03p13100 Brassica napus HOM05D007990 ORTHO05D009984 1.4e-10 70.5 176 33.5
BraA03t10620Z Brassica rapa HOM05D007990 ORTHO05D009984 1.4e-10 70.5 176 33.5
Ca_21278_v3 Cicer arietinum L. HOM05D007990 ORTHO05D009984 1.4e-10 70.5 99 45.5
THA.LOC104817754 Tarenaya hassleriana HOM05D007990 ORTHO05D009984 1.4e-10 70.5 102 43.1
BcaC04g20046 Brassica carinata HOM05D007990 ORTHO05D009984 9.2e-10 67.8 176 31.8
C09p48510 Brassica napus HOM05D007990 ORTHO05D009984 9.2e-10 67.8 166 31.3
BolC9t57693H Brassica oleracea HOM05D007990 ORTHO05D009984 9.2e-10 67.8 176 31.8
AUR62027510 Chenopodium quinoa HOM05D007990 ORTHO05D009984 4.6e-09 65.5 50 66.0
C09p48480 Brassica napus HOM05D007990 ORTHO05D009984 1.7e-08 63.5 83 43.4
PGR102G1891 Punica granatum HOM05D007990 ORTHO05D009984 1.7e-08 63.5 149 39.6
HanXRQChr12g0354891 Helianthus annuus HOM05D007990 ORTHO05D009984 3.0e-08 62.8 112 42.0
BcaC04g20048 Brassica carinata HOM05D007990 ORTHO05D009984 6.6e-08 61.6 83 42.2
BolC9t57691H Brassica oleracea HOM05D007990 ORTHO05D009984 6.6e-08 61.6 83 42.2
MD15G1207000 Malus domestica HOM05D007990 ORTHO05D009984 4.3e-07 58.9 125 40.0
Nn8g38865 Nelumbo nucifera HOM05D018816 ORTHO05D011230 7.3e-07 58.2 106 38.7
BraA10t43507Z Brassica rapa HOM05D007990 ORTHO05D009984 4.7e-06 55.5 130 36.9


User provided reference genes

Program Settings