Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 7.2e-187 657.1 341 100.0
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 1.3e-143 513.5 334 84.7
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 4.1e-134 481.9 317 81.7
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 7.6e-112 407.9 258 86.0
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 8.1e-98 361.3 341 58.1
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 8.1e-98 361.3 332 62.0
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.2e-96 357.5 339 59.3
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 1.5e-96 357.1 318 62.9
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 2.6e-96 356.3 328 60.7
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 1.0e-95 354.4 330 60.3
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.0e-95 354.4 331 60.7
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 1.7e-95 353.6 333 59.8
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 1.7e-95 353.6 326 62.6
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 2.2e-95 353.2 337 60.2
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 4.9e-95 352.1 332 59.0
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 1.4e-94 350.5 343 58.3
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 5.5e-94 348.6 330 59.4
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 5.5e-94 348.6 348 58.0
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 3.5e-93 345.9 334 57.8
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 3.5e-93 345.9 331 60.7
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 8.7e-92 341.3 340 56.5
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 8.7e-92 341.3 333 56.8
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.1e-91 340.9 327 59.6
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 1.9e-91 340.1 336 58.6
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 2.5e-91 339.7 333 56.8
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 1.6e-90 337.0 328 59.8
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 2.8e-90 336.3 322 61.2
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 1.1e-89 334.3 349 56.4
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 1.8e-89 333.6 316 59.5
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.8e-89 333.6 337 58.5
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 2.4e-89 333.2 318 59.4
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 3.1e-89 332.8 319 56.7
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 4.1e-89 332.4 337 57.6
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 4.1e-89 332.4 337 57.6
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 3.4e-88 329.3 312 59.0
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 5.9e-88 328.6 312 59.0
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 5.9e-88 328.6 312 59.6
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.0e-87 327.8 314 58.9
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 2.2e-87 326.6 340 54.4
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 2.2e-87 326.6 315 57.8
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 2.9e-87 326.2 336 55.7
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 3.8e-87 325.9 332 55.1
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 6.5e-87 325.1 312 58.3
Sopen01g010510 Solanum pennellii HOM05D006361 ORTHO05D007824 1.4e-86 323.9 346 55.2
PGSC0003DMG400030230 Solanum tuberosum HOM05D006361 ORTHO05D007824 2.5e-86 323.2 338 57.1
CAN.G282.86 Capsicum annuum HOM05D006361 ORTHO05D007824 3.2e-86 322.8 315 58.4
Sopen01g014340 Solanum pennellii HOM05D006361 ORTHO05D007824 3.2e-86 322.8 326 58.0
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 7.2e-86 321.6 319 58.3
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 1.2e-85 320.9 314 60.2
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.3e-84 317.4 311 58.5
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 2.3e-84 316.6 321 55.1
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 2.3e-84 316.6 343 54.5
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 3.0e-84 316.2 355 51.8
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 3.0e-84 316.2 338 53.0
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 5.1e-84 315.5 430 46.0
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 6.7e-84 315.1 321 55.8
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 6.7e-84 315.1 322 53.7
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 8.7e-84 314.7 329 55.9
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 1.1e-83 314.3 315 55.2
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 1.1e-83 314.3 317 56.5
ECA233G5480 Erigeron canadensis HOM05D006361 ORTHO05D007824 2.5e-83 313.2 317 53.3
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 3.3e-83 312.8 331 53.5
Nitab4.5_0003889g0010 Nicotiana tabacum HOM05D006361 ORTHO05D007824 3.3e-83 312.8 308 58.8
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 4.3e-83 312.4 327 53.5
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 4.3e-83 312.4 316 56.6
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 4.3e-83 312.4 316 56.6
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 5.7e-83 312.0 314 57.3
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 2.2e-82 310.1 320 57.2
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 2.8e-82 309.7 316 56.6
Lsat_1_v5_gn_8_33920 Lactuca sativa HOM05D006361 ORTHO05D007824 2.8e-82 309.7 311 55.9
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 3.7e-82 309.3 326 54.0
Dinv06050 Davidia involucrata HOM05D006361 ORTHO05D007824 1.1e-81 307.8 325 55.1
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.4e-81 306.6 328 54.3
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 3.4e-80 302.8 333 56.2
Nitab4.5_0000944g0110 Nicotiana tabacum HOM05D006361 ORTHO05D007824 1.3e-79 300.8 319 57.1
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 6.5e-79 298.5 319 55.2
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 2.5e-78 296.6 322 54.3
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 3.2e-78 296.2 308 53.9
arahy.Tifrunner.gnm1.ann1.3EIQ25 Arachis hypogaea HOM05D006361 ORTHO05D007824 1.2e-77 294.3 366 51.1
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 5.1e-76 288.9 308 53.9
Os02g0672400 Oryza sativa ssp. japonica HOM05D006361 ORTHO05D007824 5.1e-76 288.9 329 50.5
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 1.1e-75 287.7 332 50.9
CDE04G0863 Ceratophyllum demersum HOM05D006361 ORTHO05D007824 2.6e-75 286.6 325 52.0
HPP92_007296 Vanilla planifolia HOM05D006361 ORTHO05D007824 2.8e-74 283.1 321 49.8
Atru.chr11.1031 Acer truncatum HOM05D006361 ORTHO05D007824 6.9e-73 278.5 332 52.1
Ah.03g147180 Amaranthus hybridus HOM05D006361 ORTHO05D007824 2.2e-71 273.5 321 50.8
AUR62017787 Chenopodium quinoa HOM05D006361 ORTHO05D007824 1.6e-69 267.3 333 51.4
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.6e-69 267.3 261 59.0
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 3.0e-68 263.1 271 56.1
ATR0807G049 Amborella trichopoda HOM05D006361 ORTHO05D007824 1.1e-67 261.2 329 48.0
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 4.4e-67 259.2 276 53.3
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 1.1e-62 244.6 322 47.2
SEGI_09761 Sequoiadendron giganteum HOM05D006361 ORTHO05D007824 2.2e-58 230.3 383 39.4
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 1.3e-55 221.1 405 39.3
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 3.8e-47 193.0 181 59.7
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 5.0e-47 192.6 219 53.9
Mapoly0161s0009 Marchantia polymorpha HOM05D006361 ORTHO05D007824 1.7e-42 177.6 370 32.4
Hund12782 Selenicereus undatus HOM05D006361 ORTHO05D007824 2.9e-39 166.8 137 65.0
Haze_10738 Corylus avellana HOM05D006361 ORTHO05D007824 3.8e-39 166.4 210 49.5
AagrBONN_evm.TU.Sc2ySwM_228.545 Anthoceros agrestis HOM05D006361 ORTHO05D007824 2.5e-38 163.7 352 34.4
arahy.Tifrunner.gnm1.ann1.10LCJA Arachis hypogaea HOM05D006361 ORTHO05D007824 7.3e-38 162.2 287 40.4
Actinidia34045 Actinidia chinensis HOM05D006361 ORTHO05D007824 1.3e-23 114.8 135 50.4
CBR_g51236 Chara braunii HOM05D006361 ORTHO05D007824 1.7e-23 114.4 451 24.6
Glyma.10G280900 Glycine max HOM05D006361 ORTHO05D007824 1.7e-23 114.4 216 39.8
MBI06_g04759_MAGBIO Magnolia biondii HOM05D006361 ORTHO05D007824 9.5e-22 108.6 91 63.7
Actinidia34046 Actinidia chinensis HOM05D006361 ORTHO05D007824 8.1e-21 105.5 83 66.3
VMungo0251G1708 Vigna mungo HOM05D006361 ORTHO05D007824 7.5e-19 99.0 95 54.7
Oeu038968.1 Olea europaea HOM05D006361 ORTHO05D007824 4.1e-17 93.2 179 39.1
Zm00001eb250300 Zea mays HOM05D006361 ORTHO05D007824 4.1e-17 93.2 146 41.1
Pp3c10_230 Physcomitrium patens HOM05D006361 ORTHO05D007824 7.1e-17 92.4 251 29.9
Cc00_g30730 Coffea canephora HOM05D006361 ORTHO05D007824 6.0e-16 89.4 84 60.7
Sabra19G0029800 Salix brachista HOM05D006361 ORTHO05D007824 6.0e-16 89.4 63 68.3
SMO115G0015 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 6.6e-15 85.9 256 29.7
SMO166G0069 Selaginella moellendorffii HOM05D006361 ORTHO05D007824 2.1e-13 80.9 252 29.0
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.9e-10 70.5 54 57.4
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 3.8e-10 70.1 48 62.5
Hma1.2p1_0068F.1_g037180 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 8.4e-10 68.9 45 66.7
Cc00_g15950 Coffea canephora HOM05D006361 ORTHO05D007824 1.4e-09 68.2 61 57.4
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 1.2e-08 65.1 44 65.9
Cc00_g35660 Coffea canephora HOM05D006361 ORTHO05D007824 4.6e-08 63.2 56 51.8


User provided reference genes

Program Settings