Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 4.4e-112 407.9 199 100.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.4e-97 359.8 199 87.9
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.3e-95 353.2 199 85.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.7e-77 292.4 202 73.8
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-58 230.3 174 64.4
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.8e-57 226.5 141 74.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.4e-57 226.1 158 69.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.4e-57 226.1 141 74.5
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 2.4e-57 226.1 132 76.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-57 225.7 141 74.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 4.1e-57 225.3 144 72.9
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 5.3e-57 224.9 200 58.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 9.1e-57 224.2 182 61.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 9.1e-57 224.2 134 73.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 9.1e-57 224.2 179 62.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 9.1e-57 224.2 183 61.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.2e-56 223.8 137 74.5
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-56 223.4 142 72.5
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-56 223.4 142 72.5
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.0e-56 223.0 183 60.1
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.0e-56 223.0 199 56.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.4e-56 222.2 129 79.1
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.9e-56 221.5 139 72.7
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.9e-56 221.5 182 59.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 7.7e-56 221.1 199 58.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.3e-55 220.3 135 73.3
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.7e-55 219.9 142 72.5
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.7e-55 219.9 199 57.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.2e-55 219.5 199 58.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.9e-55 219.2 199 58.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.9e-55 219.2 199 57.8
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.9e-55 219.2 144 71.5
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 3.8e-55 218.8 139 71.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.8e-55 218.8 199 57.3
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 5.0e-55 218.4 137 73.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 6.5e-55 218.0 199 55.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-54 217.2 168 63.7
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-54 217.2 162 63.6
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.4e-54 216.9 129 74.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.4e-54 216.9 136 75.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.4e-54 216.9 128 76.6
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.4e-54 216.9 199 57.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.4e-54 216.9 150 67.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.9e-54 216.5 136 69.9
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.2e-54 215.7 199 56.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 3.2e-54 215.7 149 70.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 5.5e-54 214.9 137 69.3
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 5.5e-54 214.9 130 73.8
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 7.2e-54 214.5 132 73.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 7.2e-54 214.5 165 63.0
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 9.4e-54 214.2 139 69.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-53 213.8 145 69.7
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.6e-53 213.4 199 56.3
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.7e-53 212.6 168 61.9
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.7e-53 212.6 168 62.5
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.7e-53 212.6 144 70.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.7e-53 212.6 142 69.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.6e-53 212.2 139 69.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.6e-53 212.2 129 73.6
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.7e-53 211.8 143 69.2
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 6.1e-53 211.5 142 67.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.9e-53 211.1 149 67.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.0e-52 210.7 190 55.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.8e-52 209.9 199 53.8
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-52 209.9 137 68.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.3e-52 209.5 173 59.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.0e-52 209.1 187 57.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.9e-52 208.8 128 71.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.9e-52 208.8 141 67.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.9e-52 208.8 129 73.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.2e-52 208.4 147 66.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 8.8e-52 207.6 142 67.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 8.8e-52 207.6 142 67.6
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 8.8e-52 207.6 142 66.9
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 8.8e-52 207.6 126 75.4
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.1e-51 207.2 201 52.7
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.1e-51 207.2 140 68.6
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-51 206.8 129 72.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.5e-51 206.8 203 54.7
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.0e-51 206.5 140 67.9
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.0e-51 206.5 199 54.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-51 206.5 201 54.2
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.6e-51 206.1 129 69.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.6e-51 206.1 140 68.6
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 3.3e-51 205.7 129 72.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.3e-51 205.7 143 65.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.4e-51 205.3 145 67.6
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.4e-51 205.3 147 66.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 9.7e-51 204.1 200 55.0
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-50 203.8 129 70.5
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-50 203.0 129 69.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.2e-50 203.0 137 68.6
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.8e-50 202.6 143 67.1
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.8e-50 202.6 129 69.8
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.8e-50 202.6 137 67.9
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.7e-50 202.2 194 53.1
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.8e-50 201.8 173 56.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 6.3e-50 201.4 129 72.1
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.4e-49 200.3 178 57.3
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.8e-49 199.9 129 68.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.4e-49 199.5 176 55.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.1e-49 199.1 129 68.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.1e-49 198.7 138 68.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 9.1e-49 197.6 156 61.5
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 9.1e-49 197.6 170 58.8
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-48 197.2 147 64.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.6e-48 196.8 173 57.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.0e-48 196.4 211 50.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.6e-48 196.1 129 71.3
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 5.9e-48 194.9 140 65.7
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 5.0e-47 191.8 191 50.8
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 6.5e-47 191.4 142 64.1
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 6.5e-47 191.4 115 70.4
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 8.5e-47 191.0 203 51.2
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.2e-46 189.1 116 73.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.6e-45 186.8 119 68.9
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.6e-45 185.7 145 60.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 6.1e-45 184.9 180 53.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.4e-43 178.7 263 40.7
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.7e-43 178.3 183 54.1
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.7e-42 175.6 126 65.9
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 8.2e-42 174.5 113 69.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.2e-40 170.6 244 39.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.1e-37 159.8 123 59.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.4e-35 152.1 124 56.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.3e-34 147.9 87 72.4
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.8e-33 146.7 195 42.1
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.2e-31 139.8 91 70.3
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.6e-29 132.5 132 50.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.0e-28 129.4 148 50.0
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 9.8e-27 124.4 80 71.2
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.2e-26 123.2 79 65.8
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.8e-26 122.9 86 62.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.9e-26 122.1 72 70.8
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.1e-25 119.0 91 67.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 4.1e-25 119.0 72 69.4
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 4.3e-22 109.0 65 69.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.3e-22 108.2 113 42.5
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.6e-19 99.8 138 37.7
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-18 96.7 60 66.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 6.4e-18 95.1 124 49.2
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 7.0e-09 65.1 52 53.8
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.2e-09 64.7 49 67.3
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 9.2e-09 64.7 35 74.3


User provided reference genes

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