Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 4.1e-237 824.3 411 100.0
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 1.7e-206 722.6 411 87.8
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 4.4e-183 644.8 357 90.2
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 3.3e-146 522.3 328 79.9
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 2.9e-142 509.2 410 65.4
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.5e-135 486.9 410 62.2
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 2.9e-134 482.6 410 61.7
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 3.6e-132 475.7 415 62.2
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 4.4e-130 468.8 410 60.0
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 3.7e-129 465.7 410 62.0
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 4.8e-129 465.3 410 58.8
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 6.3e-129 464.9 410 60.5
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 2.4e-128 463.0 410 58.5
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 6.5e-126 454.9 412 59.7
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 2.7e-124 449.5 410 59.0
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 3.6e-124 449.1 410 59.0
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 6.1e-124 448.4 410 58.3
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 6.3e-121 438.3 410 58.0
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 8.3e-121 438.0 518 49.6
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 1.1e-120 437.6 410 57.3
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.7e-119 433.0 411 57.2
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.7e-119 433.0 410 56.3
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.7e-119 433.0 421 57.2
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 2.7e-119 433.0 410 58.0
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 5.9e-119 431.8 415 57.1
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 7.7e-119 431.4 409 56.5
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 1.7e-118 430.3 413 56.7
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 2.2e-118 429.9 407 56.0
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.9e-118 429.5 414 56.8
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 3.2e-117 426.0 410 56.6
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 3.2e-117 426.0 412 58.0
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 4.2e-117 425.6 411 56.4
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 9.4e-117 424.5 410 57.6
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 2.1e-116 423.3 408 55.6
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.1e-116 423.3 410 56.1
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 4.7e-116 422.2 410 54.4
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.1e-116 421.8 429 54.8
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 1.4e-115 420.6 409 57.0
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.8e-115 420.2 413 54.2
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 4.0e-115 419.1 410 55.6
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 2.6e-114 416.4 409 56.2
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 6.3e-113 411.8 407 54.3
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 1.4e-112 410.6 407 56.3
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 5.4e-112 408.7 409 55.7
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 2.7e-111 406.4 411 55.7
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 1.7e-110 403.7 408 52.9
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.7e-110 403.7 408 53.7
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.7e-110 403.7 412 56.1
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 1.5e-109 400.6 408 54.7
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 1.9e-109 400.2 409 55.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 4.2e-109 399.1 403 55.1
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 5.6e-109 398.7 418 53.3
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.2e-108 397.5 410 54.4
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 3.6e-108 396.0 419 53.9
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 3.6e-108 396.0 409 54.3
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 6.1e-108 395.2 410 52.0
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 3.0e-107 392.9 428 52.8
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 4.4e-106 389.0 415 52.5
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 5.7e-106 388.7 415 52.5
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 9.8e-106 387.9 413 53.3
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.3e-105 387.5 413 52.3
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 2.2e-105 386.7 422 51.2
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 2.2e-105 386.7 418 52.4
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 2.9e-105 386.3 408 50.5
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 3.7e-105 386.0 409 53.5
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 4.9e-105 385.6 416 53.6
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 4.9e-105 385.6 419 52.0
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 6.4e-105 385.2 412 51.2
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 1.1e-104 384.4 434 50.5
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 2.4e-104 383.3 401 52.9
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 7.0e-104 381.7 418 50.2
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 2.7e-103 379.8 417 52.0
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 3.5e-103 379.4 416 51.7
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.0e-102 377.9 404 52.0
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 3.9e-102 375.9 417 52.3
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 5.0e-102 375.6 419 51.6
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 6.6e-102 375.2 417 51.6
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 9.5e-101 371.3 415 52.0
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.8e-99 367.1 416 49.8
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 2.3e-99 366.7 406 51.5
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.5e-98 364.0 367 56.7
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 3.4e-98 362.8 408 51.2
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 4.1e-96 355.9 409 51.1
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 5.4e-96 355.5 357 54.6
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 9.2e-96 354.8 431 48.0
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.0e-94 351.3 403 51.6
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.3e-94 350.9 386 51.6
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 2.3e-94 350.1 351 58.1
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 7.3e-93 345.1 408 50.0
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 8.9e-91 338.2 351 53.0
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 7.1e-88 328.6 502 42.8
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 6.2e-84 315.5 428 44.6
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 5.2e-83 312.4 347 49.9
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 1.2e-82 311.2 382 47.1
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 6.2e-76 288.9 314 52.5
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 8.1e-76 288.5 317 51.1
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 3.1e-75 286.6 319 50.8
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 5.2e-75 285.8 433 43.6
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 1.1e-72 278.1 312 51.0
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 1.3e-70 271.2 368 47.3
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 1.7e-70 270.8 355 47.6
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.6e-70 268.9 286 52.8
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 3.3e-69 266.5 328 48.5
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 4.5e-58 229.6 165 70.9
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 8.4e-57 225.3 315 45.1
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 6.7e-54 215.7 419 37.5
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 9.0e-51 205.3 323 44.0
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 1.5e-50 204.5 340 41.2
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 7.6e-50 202.2 410 34.1
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.7e-49 201.1 270 45.6
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.2e-47 194.9 402 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 7.9e-47 192.2 472 32.6
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.3e-46 191.4 276 42.8
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 1.8e-46 191.0 268 45.1
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 1.8e-43 181.0 267 42.7
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 5.9e-34 149.4 220 42.7
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 9.4e-32 142.1 74 85.1
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.2e-31 141.7 76 81.6
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.2e-31 141.7 72 86.1
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 7.9e-31 139.0 71 84.5
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 3.0e-30 137.1 369 29.8
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.0e-29 134.4 72 80.6
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.3e-29 133.7 106 63.2
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.9e-24 117.9 196 41.8
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.5e-24 117.5 82 65.9
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 2.3e-22 110.9 191 41.9
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 3.9e-22 110.2 581 23.6
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 1.3e-20 105.1 167 37.7
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 2.8e-20 104.0 163 36.8
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 6.3e-20 102.8 103 54.4
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.2e-18 98.6 54 79.6
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 2.0e-18 97.8 171 39.8
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 1.7e-12 78.2 148 36.5
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.3e-12 76.3 169 35.5
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 1.2e-10 72.0 117 40.2
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 2.5e-08 64.3 60 50.0


User provided reference genes

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