Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.8e-41 172.2 88 100.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.9e-38 162.2 90 94.4
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 2.7e-37 158.3 87 95.4
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 5.5e-30 134.0 88 84.1
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 4.9e-23 110.9 95 66.3
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 7.9e-21 103.6 93 63.4
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 3.0e-20 101.7 91 63.7
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 3.9e-20 101.3 88 61.4
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.9e-19 99.0 100 60.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.3e-19 98.2 105 53.3
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 3.3e-19 98.2 95 61.1
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 3.3e-19 98.2 91 65.9
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 9.7e-19 96.7 93 64.5
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.8e-18 95.1 96 61.5
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.8e-18 95.1 91 58.2
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 3.7e-18 94.7 96 59.4
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.7e-18 94.7 98 59.2
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 8.2e-18 93.6 95 61.1
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 1.4e-17 92.8 101 57.4
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.4e-17 92.8 82 62.2
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.8e-17 92.4 92 56.5
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.8e-17 92.4 100 58.0
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 2.4e-17 92.0 82 61.0
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.4e-17 92.0 95 61.1
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 3.1e-17 91.7 91 56.0
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 9.0e-17 90.1 104 53.8
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.2e-16 89.7 100 56.0
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 1.5e-16 89.4 93 57.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.6e-16 88.6 101 57.4
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.6e-16 88.6 101 57.4
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 3.4e-16 88.2 95 58.9
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 3.4e-16 88.2 92 57.6
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 5.9e-16 87.4 88 62.5
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 7.7e-16 87.0 95 58.9
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.0e-15 86.7 104 53.8
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.0e-15 86.7 99 54.5
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.7e-15 85.9 96 56.2
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.2e-15 85.5 83 66.3
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.2e-15 85.5 104 53.8
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 2.9e-15 85.1 93 54.8
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.9e-15 85.1 101 55.4
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 3.8e-15 84.7 92 51.1
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.8e-15 84.7 97 55.7
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 6.5e-15 84.0 90 57.8
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 8.5e-15 83.6 92 55.4
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.1e-14 83.2 105 53.3
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.9e-14 82.4 106 50.9
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.5e-14 82.0 83 59.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.2e-14 81.6 99 53.5
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.2e-14 81.6 93 53.8
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.5e-14 80.9 97 53.6
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.5e-14 80.9 89 55.1
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.5e-14 80.9 87 60.9
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 7.2e-14 80.5 94 54.3
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 9.4e-14 80.1 99 48.5
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.6e-13 78.2 99 53.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 3.6e-13 78.2 99 53.5
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 6.1e-13 77.4 84 54.8
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 7.9e-13 77.0 98 54.1
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.0e-12 76.6 87 55.2
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 6.7e-12 73.9 94 48.9
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.8e-12 73.6 99 51.5
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 8.8e-12 73.6 88 53.4
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.0e-11 72.4 94 48.9
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 4.3e-11 71.2 71 60.6
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.3e-10 69.7 100 48.0
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.3e-10 69.7 88 52.3
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 1.5e-08 62.8 93 45.2
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 2.0e-08 62.4 82 52.4
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.6e-08 62.0 95 46.3
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 2.6e-08 62.0 78 55.1
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 2.6e-08 62.0 90 48.9
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.6e-08 62.0 102 50.0
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 3.4e-08 61.6 80 57.5
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.4e-08 61.6 102 50.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 5.9e-08 60.8 82 52.4
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.2e-07 58.9 94 47.9
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 5.0e-07 57.8 71 52.1
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 8.5e-07 57.0 74 50.0
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 8.5e-07 57.0 48 58.3
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.4e-06 56.2 79 46.8
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 1.9e-06 55.8 80 47.5
Medtr2g104750 Medicago truncatula HOM05D007574 ORTHO05D007552 2.5e-06 55.5 85 44.7
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 4.2e-06 54.7 91 42.9
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 9.4e-06 53.5 87 44.8
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 9.4e-06 53.5 79 45.6
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 9.4e-06 53.5 90 41.1


User provided reference genes

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