Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 5.6e-303 1043.5 539 100.0
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 4.3e-170 602.1 543 65.7
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 5.7e-170 601.7 544 64.0
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.7e-161 573.5 543 63.9
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.2e-100 371.3 544 44.1
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 6.2e-100 369.0 545 44.4
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 8.9e-99 365.2 549 44.6
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 8.9e-99 365.2 544 43.2
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.5e-98 364.4 550 44.2
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.4e-96 357.8 547 42.8
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 5.6e-93 345.9 549 42.4
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.6e-92 344.4 546 42.1
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.6e-90 337.0 547 41.9
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 4.2e-88 329.7 488 43.2
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 7.1e-88 328.9 543 40.7
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 9.3e-88 328.6 551 41.9
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 8.7e-86 322.0 544 39.7
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 3.3e-85 320.1 553 41.2
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 4.3e-85 319.7 545 40.6
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 4.8e-84 316.2 549 39.9
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 8.1e-84 315.5 547 39.5
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 8.1e-84 315.5 490 43.3
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.1e-83 315.1 547 41.1
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 1.4e-83 314.7 353 54.7
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 2.4e-83 313.9 551 41.9
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 9.0e-83 312.0 544 41.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.5e-82 311.2 353 54.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.5e-82 311.2 551 40.7
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 3.4e-82 310.1 503 40.8
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 5.4e-80 302.8 562 39.9
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.1e-80 302.4 551 39.4
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 9.3e-80 302.0 554 40.4
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.2e-79 301.6 505 39.8
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 4.6e-79 299.7 506 39.9
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 1.0e-78 298.5 547 40.8
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.0e-78 298.5 534 39.5
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 1.1e-77 295.0 532 39.7
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 5.6e-77 292.7 550 38.9
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 9.6e-77 292.0 517 39.7
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.6e-76 290.0 350 50.6
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 1.1e-75 288.5 536 38.1
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 9.0e-75 285.4 551 38.3
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 9.0e-75 285.4 554 37.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 2.0e-74 284.3 499 38.5
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 2.0e-74 284.3 535 38.9
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 5.8e-74 282.7 542 37.8
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 7.6e-74 282.3 490 39.0
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 1.2e-71 275.0 513 39.0
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.6e-71 274.6 531 37.1
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 3.5e-71 273.5 546 37.7
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.0e-70 271.9 545 36.9
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.8e-70 271.2 531 37.1
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 6.7e-70 269.2 542 36.5
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 8.7e-70 268.9 542 35.8
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 8.7e-70 268.9 551 36.5
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 7.4e-69 265.8 497 37.8
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 9.6e-69 265.4 545 35.2
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.1e-68 264.2 531 37.1
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 2.1e-68 264.2 544 36.4
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 2.8e-68 263.8 547 36.6
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 4.8e-68 263.1 534 36.5
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 4.8e-68 263.1 497 39.4
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 4.0e-67 260.0 542 36.3
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.0e-67 260.0 497 37.6
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 5.3e-67 259.6 496 38.9
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 2.0e-66 257.7 362 46.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 3.4e-66 256.9 540 35.6
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 3.4e-66 256.9 542 35.8
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.0e-65 255.4 536 34.9
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 1.3e-65 255.0 506 36.0
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 1.4e-64 251.5 567 34.7
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.2e-64 250.4 495 38.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 7.9e-63 245.7 553 34.5
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 2.3e-62 244.2 508 37.2
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 3.0e-62 243.8 542 34.7
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 2.5e-61 240.7 555 33.5
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 4.3e-61 240.0 550 34.7
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 7.4e-61 239.2 554 35.2
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.4e-59 235.0 338 45.6
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.4e-58 230.3 337 44.5
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 3.4e-58 230.3 567 35.4
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 5.8e-58 229.6 534 34.5
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 6.5e-57 226.1 542 32.1
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 8.4e-57 225.7 295 48.1
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 6.7e-54 216.1 343 40.8
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 5.7e-53 213.0 555 32.3
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.4e-51 207.6 472 36.0
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 2.0e-50 204.5 296 42.9
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 2.0e-50 204.5 426 35.4
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 1.4e-48 198.4 290 42.1
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 3.2e-48 197.2 512 32.0
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 9.4e-48 195.7 355 40.3
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 8.8e-46 189.1 544 30.3
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 4.3e-45 186.8 455 33.0
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 6.3e-44 183.0 467 32.1
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.3e-38 164.5 358 33.8
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.7e-36 157.1 287 37.3
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.4e-35 154.5 542 27.9
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.2e-33 147.9 530 28.5
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 5.0e-33 146.7 231 40.7
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.5e-32 145.2 270 36.3
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.5e-29 135.2 133 63.2
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 9.7e-29 132.5 185 47.6
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.7e-28 131.7 315 32.1
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 3.6e-23 114.0 94 59.6
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.2e-18 99.0 489 26.4
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 1.0e-17 95.9 306 31.0
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.7e-17 95.1 204 34.3
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.4e-14 85.5 118 45.8
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.3e-12 79.0 292 28.4
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.1e-08 65.9 56 60.7
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 1.9e-08 65.1 273 26.7
COL.COLO4_14761 Corchorus olitorius HOM05D006045 ORTHO05D007678 4.7e-07 60.5 74 54.1
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 2.3e-06 58.2 43 60.5
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 2.3e-06 58.2 68 47.1


User provided reference genes

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