Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 3.2e-254 881.3 459 100.0
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.4e-238 829.3 461 93.3
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.5e-235 818.5 461 92.4
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 4.7e-234 814.3 461 91.3
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 7.6e-200 700.7 473 78.2
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.6e-197 693.0 473 76.5
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 4.6e-197 691.4 463 78.0
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 6.7e-196 687.6 472 75.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.9e-195 686.0 457 77.0
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.6e-194 682.9 463 77.3
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.1e-194 682.6 451 78.7
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.4e-193 679.1 452 78.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.2e-192 676.8 461 76.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-192 676.8 451 78.0
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.5e-192 676.4 474 75.5
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-191 673.7 451 77.8
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.9e-191 672.2 466 76.4
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.8e-191 671.8 472 74.8
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 5.0e-191 671.4 476 73.9
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 8.5e-191 670.6 470 76.8
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.4e-190 669.8 466 75.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.2e-190 668.7 473 74.2
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.5e-190 667.9 461 76.1
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 9.3e-190 667.2 466 75.5
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.6e-189 666.4 442 78.3
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 2.1e-189 666.0 451 77.8
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 3.6e-189 665.2 452 77.2
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 6.1e-189 664.5 449 76.4
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.0e-188 663.7 444 77.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.3e-188 663.3 444 76.4
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.8e-188 662.9 444 76.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.8e-188 662.9 469 75.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.3e-188 662.5 457 76.1
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 3.0e-188 662.1 473 74.2
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 3.9e-188 661.8 467 73.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-187 659.8 473 73.6
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.5e-187 659.1 470 74.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.3e-187 658.7 467 74.5
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.3e-187 658.3 461 74.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.7e-187 657.9 462 74.7
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 9.7e-187 657.1 484 72.3
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 9.7e-187 657.1 467 73.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 9.7e-187 657.1 472 73.5
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.3e-186 656.8 461 74.0
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.3e-186 656.8 501 70.1
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 2.2e-186 656.0 443 78.6
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.2e-186 656.0 473 73.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 2.8e-186 655.6 450 76.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.8e-186 655.6 459 73.2
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.7e-186 655.2 429 79.5
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.8e-185 652.9 474 73.6
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 3.1e-185 652.1 473 73.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 6.9e-185 651.0 474 73.4
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 6.9e-185 651.0 473 73.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.2e-184 650.2 472 72.9
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.5e-184 649.8 465 73.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.3e-183 646.7 474 72.8
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.3e-183 646.7 487 70.4
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 6.5e-183 644.4 472 72.5
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.9e-182 642.9 454 74.0
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.2e-182 642.1 431 76.6
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.0e-180 637.1 473 71.9
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.8e-180 636.3 461 71.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.8e-180 636.3 461 71.1
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 2.3e-180 636.0 461 71.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.9e-180 635.2 461 71.1
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.9e-180 635.2 461 71.1
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 5.1e-180 634.8 460 71.3
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 8.8e-180 634.0 461 70.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-179 633.6 464 70.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 3.3e-179 632.1 489 69.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.4e-179 631.7 468 70.1
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.7e-179 631.3 469 69.9
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 7.4e-179 630.9 461 71.1
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-178 630.2 459 71.0
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.3e-178 630.2 463 70.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.2e-178 629.4 459 71.9
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.7e-178 628.6 480 70.2
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 6.3e-178 627.9 459 72.3
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 8.2e-178 627.5 446 73.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.4e-177 626.7 444 72.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.8e-177 626.3 459 71.2
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.8e-177 626.3 461 71.1
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 5.3e-177 624.8 464 70.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.5e-176 623.2 444 73.0
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.2e-175 619.4 453 73.1
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.5e-174 615.9 487 66.7
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.2e-173 613.6 401 78.6
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.7e-173 612.5 472 68.4
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.1e-171 607.1 411 77.4
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.6e-168 596.7 457 68.7
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.5e-168 595.1 550 60.7
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.2e-167 592.8 408 75.0
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 3.2e-166 589.0 440 71.1
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 7.2e-166 587.8 422 75.1
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.0e-163 579.7 427 72.6
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 4.8e-162 575.1 422 72.3
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.5e-160 568.9 424 69.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.5e-158 563.5 397 75.8
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.4e-155 552.4 426 67.8
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.4e-153 547.0 461 65.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.5e-151 537.7 405 72.3
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 8.5e-151 537.7 441 65.3
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.2e-149 533.9 388 70.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.0e-148 530.8 434 65.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 8.9e-140 501.1 347 77.2
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 9.8e-139 497.7 473 61.1
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 4.0e-132 475.7 436 58.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.6e-126 455.3 399 64.9
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 7.3e-126 454.9 362 66.6
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.4e-121 439.9 434 56.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.4e-121 439.9 324 74.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 4.7e-117 425.6 331 67.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.9e-114 416.4 436 54.1
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.8e-106 389.4 253 79.8
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 6.2e-101 372.1 386 56.2
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.9e-86 323.9 241 71.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 3.8e-82 309.7 236 70.8
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.7e-77 293.1 202 75.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.5e-74 282.3 197 74.6
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.4e-68 264.6 204 69.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.2e-64 251.5 218 61.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-62 245.0 182 74.2
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 3.1e-60 236.9 147 80.3
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.6e-51 207.2 475 34.5
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.5e-42 175.6 124 71.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.0e-34 149.8 142 62.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 8.6e-34 149.1 139 62.6
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.2e-33 146.0 117 64.1
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 2.3e-31 141.0 160 57.5
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 8.9e-31 139.0 256 40.6
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.5e-30 138.3 118 61.0
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 8.3e-29 132.5 102 67.6
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.4e-28 129.8 256 38.7
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.0e-27 127.9 101 66.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.8e-23 114.8 106 58.5
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 3.0e-18 97.4 112 57.1
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.3e-17 94.0 85 55.3
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.9e-15 85.9 46 82.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.9e-15 85.9 46 82.6
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.6e-14 84.3 119 44.5
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.4e-14 83.6 119 47.1
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 5.8e-14 83.2 78 57.7
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 7.5e-14 82.8 119 43.7
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 7.5e-14 82.8 119 43.7
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 7.5e-14 82.8 119 43.7
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 9.8e-14 82.4 119 43.7
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-13 82.0 147 38.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.2e-13 81.3 124 41.9
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 2.9e-13 80.9 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 2.9e-13 80.9 46 78.3
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-12 79.0 104 46.2
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.1e-12 79.0 104 46.2
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.4e-12 78.6 90 52.2
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.6e-11 75.1 121 42.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.1e-11 74.7 60 53.3
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.7e-11 74.3 63 61.9
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 2.7e-11 74.3 164 32.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 4.6e-11 73.6 58 65.5
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 3.9e-10 70.5 63 60.3
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 3.9e-10 70.5 65 58.5
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 5.0e-10 70.1 76 51.3
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-08 65.1 176 31.2
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 5.2e-07 60.1 33 78.8
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.9e-07 59.3 45 64.4
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.4e-06 57.4 39 69.2
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 3.4e-06 57.4 47 61.7


User provided reference genes

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