Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 6.5e-107 391.0 230 100.0
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.2e-83 312.8 231 77.9
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.3e-79 298.9 231 74.9
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 8.6e-59 231.1 216 74.1
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.3e-17 94.4 275 33.5
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 4.5e-15 85.9 260 31.5
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 4.5e-15 85.9 262 31.3
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.8e-15 85.5 240 33.8
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 9.9e-15 84.7 274 31.8
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.3e-14 84.3 263 33.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.7e-14 84.0 217 35.0
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.8e-14 82.8 268 32.8
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 8.4e-14 81.6 245 34.3
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.4e-13 80.9 254 33.1
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.4e-13 80.9 282 31.6
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.9e-13 80.5 254 33.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.9e-13 80.5 234 34.2
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.9e-13 80.5 268 32.1
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.4e-13 80.1 275 32.7
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.2e-13 79.7 240 34.6
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 3.2e-13 79.7 273 30.4
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 3.2e-13 79.7 250 33.6
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.6e-12 77.4 232 32.3
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.1e-12 77.0 260 30.8
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-12 77.0 265 32.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.1e-12 77.0 251 31.1
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 3.5e-12 76.3 254 31.9
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 3.5e-12 76.3 251 34.3
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 6.0e-12 75.5 247 33.6
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 1.3e-11 74.3 273 32.2
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.3e-11 73.6 250 30.0
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 3.0e-11 73.2 264 37.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.9e-11 72.8 229 29.3
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 5.1e-11 72.4 288 31.2
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 6.7e-11 72.0 206 32.0
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.7e-11 71.6 276 27.5
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 8.7e-11 71.6 312 28.2
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 8.7e-11 71.6 245 30.2
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 8.7e-11 71.6 225 32.0
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.9e-10 70.5 207 31.4
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 2.5e-10 70.1 262 30.9
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 5.6e-10 68.9 87 47.1
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 7.4e-10 68.6 189 32.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-09 67.8 265 28.3
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 2.8e-09 66.6 199 31.7
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.8e-09 66.6 254 31.5
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 4.8e-09 65.9 274 29.9
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.2e-09 65.5 139 38.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.1e-08 64.7 233 30.0
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.4e-08 64.3 112 41.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.4e-08 64.3 199 32.7
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.8e-08 63.9 266 30.8
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.1e-08 63.2 244 32.0
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 3.1e-08 63.2 246 29.7
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 3.1e-08 63.2 300 28.0
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 5.3e-08 62.4 98 44.9
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 6.9e-08 62.0 107 41.1
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 9.0e-08 61.6 190 32.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 9.0e-08 61.6 190 32.6
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 9.0e-08 61.6 282 29.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.5e-07 60.8 83 45.8
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 2.0e-07 60.5 156 32.7
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 2.0e-07 60.5 78 47.4
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.0e-07 60.5 300 27.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.0e-07 60.5 234 30.8
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 2.0e-07 60.5 277 29.2
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.6e-07 60.1 136 32.4
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.6e-07 60.1 125 40.0
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 3.4e-07 59.7 278 26.3
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.4e-07 59.7 197 28.9
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.4e-07 59.7 102 42.2
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 4.5e-07 59.3 85 44.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.0e-06 58.2 153 35.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.0e-06 58.2 221 29.0
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.7e-06 57.4 214 29.4
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.9e-06 56.6 264 29.5
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.9e-06 56.6 82 46.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.9e-06 56.6 289 26.3
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 3.8e-06 56.2 99 41.4
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.9e-06 55.8 250 28.4
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.9e-06 55.8 85 43.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 6.4e-06 55.5 311 25.7


User provided reference genes

Program Settings