Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 3.7e-163 578.2 297 100.0
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 8.3e-147 523.9 297 89.9
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.7e-145 518.8 299 90.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.6e-129 466.5 298 83.2
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 5.6e-111 404.8 299 71.2
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.8e-109 397.9 297 69.7
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 1.4e-106 390.2 293 69.6
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 7.1e-106 387.9 297 68.4
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 6.0e-105 384.8 296 66.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.0e-104 382.5 296 68.2
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 3.9e-104 382.1 296 66.2
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.6e-104 381.3 296 65.9
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.7e-104 380.9 296 65.5
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.3e-103 378.6 298 68.1
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 4.3e-103 378.6 303 66.3
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 9.6e-103 377.5 296 66.2
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.6e-103 377.5 298 67.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.6e-103 377.5 298 67.4
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.1e-102 376.3 298 68.1
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 2.1e-102 376.3 300 69.0
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 8.1e-102 374.4 296 66.9
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 3.4e-100 369.0 293 65.9
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 5.8e-100 368.2 297 66.0
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 9.9e-100 367.5 295 66.4
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.7e-99 366.7 321 62.9
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 2.2e-99 366.3 270 68.9
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 8.4e-99 364.4 303 64.4
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.2e-98 362.5 302 65.6
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 4.2e-98 362.1 297 63.6
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.2e-97 360.5 306 64.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.7e-97 359.4 301 64.5
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.7e-97 359.4 216 79.6
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.3e-96 356.3 296 65.5
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 3.9e-96 355.5 296 64.5
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.1e-95 354.0 302 62.3
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.5e-95 353.6 298 64.4
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.5e-95 352.8 295 63.4
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.5e-95 352.8 296 64.9
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 5.6e-95 351.7 276 66.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.6e-94 350.1 244 72.5
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 3.6e-94 349.0 230 75.7
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 4.8e-94 348.6 244 73.4
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 6.2e-94 348.2 299 64.9
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 8.1e-94 347.8 293 64.5
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 3.1e-93 345.9 300 63.0
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 3.1e-93 345.9 300 63.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.1e-93 345.9 296 61.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 4.0e-93 345.5 299 65.2
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 9.0e-93 344.4 297 63.6
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.2e-92 344.0 298 63.8
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.2e-92 344.0 295 62.0
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.0e-92 343.2 298 63.1
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.0e-92 343.2 303 60.7
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.6e-92 342.8 305 61.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 2.6e-92 342.8 299 63.5
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 3.4e-92 342.4 234 73.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 4.5e-92 342.0 226 75.2
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 7.6e-92 341.3 297 61.3
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 7.6e-92 341.3 298 65.4
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 9.9e-92 340.9 297 61.3
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 1.3e-91 340.5 288 62.5
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.3e-91 340.5 255 69.4
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 2.2e-91 339.7 299 62.5
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.2e-91 339.7 300 61.3
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.2e-91 339.7 300 61.3
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 2.9e-91 339.3 248 69.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 3.8e-91 339.0 299 60.9
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 6.4e-91 338.2 301 59.8
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 6.4e-91 338.2 228 73.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 3.2e-90 335.9 286 62.6
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 5.4e-90 335.1 297 60.6
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 5.4e-90 335.1 297 60.6
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.2e-89 334.0 297 63.0
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.6e-89 333.6 237 70.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 7.9e-89 331.3 296 62.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.3e-88 330.5 297 62.0
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.8e-88 330.1 322 59.3
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.0e-88 329.3 256 66.4
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.5e-87 327.0 190 82.1
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 1.5e-87 327.0 216 71.8
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.9e-87 326.6 322 58.7
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.9e-87 326.6 225 71.1
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.3e-87 325.9 225 70.2
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 4.8e-86 322.0 225 70.7
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 6.2e-86 321.6 244 70.9
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 4.0e-85 318.9 250 65.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 6.9e-85 318.2 231 69.3
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 9.0e-85 317.8 211 70.1
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 4.9e-83 312.0 294 59.2
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.6e-81 307.0 227 69.2
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.6e-73 278.9 219 60.3
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 9.7e-71 271.2 215 60.5
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.3e-70 270.8 249 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 8.5e-67 258.1 217 56.7
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.2e-62 243.4 215 57.7
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 3.4e-60 236.1 220 60.9
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.0e-59 234.6 200 64.0
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.0e-59 234.6 181 69.1
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.6e-57 227.3 168 69.0
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 2.1e-57 226.9 226 58.4
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.7e-57 226.5 248 49.6
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.3e-54 217.6 246 46.7
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.6e-52 209.9 191 51.3
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 2.1e-49 200.3 155 65.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.7e-49 199.9 152 68.4
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 9.4e-42 174.9 135 68.9
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.6e-41 172.9 165 58.8
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 5.7e-39 165.6 105 73.3
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 7.5e-39 165.2 134 64.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 8.8e-32 141.7 79 79.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.8e-31 138.3 71 90.1
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.8e-31 138.3 71 90.1
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 9.2e-21 105.1 86 64.0
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 1.9e-18 97.4 222 28.8
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.4e-16 91.3 67 77.6
CsaV3_7G026110 Cucumis sativus L. HOM05D006384 ORTHO05D007917 2.3e-16 90.5 98 60.2
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.7e-14 83.2 105 47.6
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 3.5e-12 76.6 62 67.7
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 4.7e-09 66.2 49 69.4
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 6.2e-09 65.9 42 69.0
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 6.2e-09 65.9 267 24.0
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.8e-08 64.3 226 23.9
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.5e-07 61.2 43 58.1
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 9.8e-07 58.5 231 22.5
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.9e-06 57.0 278 23.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 8.3e-06 55.5 274 21.2


User provided reference genes

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