Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 1.5e-99 367.9 186 100.0
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 2.7e-80 303.9 186 81.7
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 4.3e-78 296.6 186 80.1
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 2.7e-56 224.2 189 57.7
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 5.6e-54 216.5 191 61.3
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 1.3e-53 215.3 189 60.3
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 3.1e-52 210.7 188 58.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.4e-51 207.2 171 62.6
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.9e-50 204.1 175 60.6
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 8.7e-47 192.6 175 54.9
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.1e-46 192.2 187 52.9
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 2.5e-46 191.0 174 52.3
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 3.3e-46 190.7 180 56.1
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 4.8e-45 186.8 186 53.8
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 1.8e-44 184.9 187 49.2
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 5.3e-44 183.3 189 47.1
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 5.3e-44 183.3 175 54.9
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 5.8e-43 179.9 188 48.9
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 2.9e-42 177.6 186 53.2
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.9e-42 177.6 172 54.7
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 6.5e-42 176.4 180 49.4
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 1.1e-41 175.6 147 61.9
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.5e-41 174.5 186 52.7
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.2e-41 174.1 188 48.4
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 4.2e-41 173.7 178 50.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 5.5e-41 173.3 168 55.4
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 9.3e-41 172.6 186 52.2
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 2.1e-40 171.4 183 49.2
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 7.9e-40 169.5 177 51.4
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.3e-39 167.9 187 48.7
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 8.7e-39 166.0 188 45.2
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 7.4e-38 162.9 153 56.2
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 7.4e-38 162.9 197 46.2
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 9.7e-38 162.5 100 80.0
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.7e-37 160.6 173 49.7
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 4.8e-37 160.2 163 52.8
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.8e-36 158.3 181 44.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.4e-36 157.9 185 47.6
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 4.1e-36 157.1 186 47.3
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 6.9e-36 156.4 163 50.9
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 9.0e-36 156.0 189 46.6
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.0e-35 154.8 182 49.5
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.6e-35 154.5 181 45.9
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 4.5e-35 153.7 152 49.3
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.7e-35 152.9 172 45.9
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 7.7e-35 152.9 184 44.0
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.0e-34 152.5 155 51.0
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 1.3e-34 152.1 188 46.3
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 1.3e-34 152.1 183 47.0
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 2.9e-34 151.0 188 46.8
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 1.4e-33 148.7 189 43.9
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 7.2e-33 146.4 182 46.7
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 7.2e-33 146.4 169 47.3
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 9.4e-33 146.0 194 43.8
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 9.4e-33 146.0 165 50.3
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 2.1e-32 144.8 183 47.5
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 3.6e-32 144.1 215 40.9
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 4.6e-32 143.7 186 41.4
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.0e-31 142.5 160 47.5
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.4e-31 142.1 185 44.3
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 3.9e-31 140.6 181 39.2
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 8.8e-31 139.4 182 43.4
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 8.8e-31 139.4 183 43.7
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.5e-30 138.7 188 41.5
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.0e-30 138.3 188 42.0
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.3e-30 137.5 156 49.4
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 5.7e-30 136.7 179 41.9
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 9.7e-30 136.0 173 45.1
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-29 135.2 160 50.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 2.2e-29 134.8 178 42.7
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.8e-28 131.7 176 42.0
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 1.8e-28 131.7 182 40.7
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.2e-27 129.0 187 40.6
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.2e-27 129.0 187 40.6
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.0e-27 128.3 184 41.3
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 5.9e-27 126.7 160 43.8
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 7.7e-27 126.3 179 40.8
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 7.7e-27 126.3 179 40.8
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 1.0e-26 125.9 183 42.1
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 1.3e-26 125.6 171 42.1
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 1.7e-26 125.2 179 40.2
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 2.2e-26 124.8 179 40.2
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 3.8e-26 124.0 179 40.2
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 5.0e-26 123.6 185 38.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 5.0e-26 123.6 187 39.6
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 1.9e-25 121.7 184 37.0
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.9e-25 121.7 110 56.4
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 3.2e-25 120.9 187 38.0
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 3.2e-25 120.9 191 34.6
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.2e-25 119.8 192 38.0
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 7.2e-25 119.8 174 39.7
RcHm_v2.0_Chr5g0057961 Rosa chinensis HOM05D004255 ORTHO05D004815 9.4e-25 119.4 166 42.2
RcHm_v2.0_Chr5g0057911 Rosa chinensis HOM05D004255 ORTHO05D004815 1.2e-24 119.0 166 42.2
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 1.6e-24 118.6 188 36.7
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.1e-24 118.2 181 39.8
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.1e-24 118.2 183 36.6
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.7e-24 117.9 185 35.1
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 2.7e-24 117.9 163 41.7
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 7.9e-24 116.3 166 41.0
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 1.0e-23 115.9 168 38.7
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 1.4e-23 115.5 191 35.6
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 1.4e-23 115.5 170 40.6
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 1.8e-23 115.2 191 36.1
Sc15g0001630 Simmondsia chinensis HOM05D004255 ORTHO05D004815 1.8e-23 115.2 160 38.8
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 2.3e-23 114.8 181 37.0
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 3.9e-23 114.0 148 41.9
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.7e-22 110.2 163 36.8
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.7e-21 108.6 170 34.7
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 2.8e-21 107.8 184 34.8
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.8e-21 107.8 114 48.2
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 3.7e-21 107.5 163 36.8
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.7e-21 107.5 163 38.7
HanXRQChr09g0259341 Helianthus annuus HOM05D004255 ORTHO05D004815 3.7e-21 107.5 159 35.8
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 4.1e-20 104.0 168 42.3
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 7.0e-20 103.2 178 34.8
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 3.5e-19 100.9 100 51.0
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 3.5e-19 100.9 179 35.2
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 5.9e-19 100.1 174 35.6
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 1.3e-18 99.0 98 51.0
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 1.3e-18 99.0 163 36.8
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 1.7e-18 98.6 190 32.1
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.7e-18 98.6 174 35.6
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 1.7e-18 98.6 150 34.0
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 2.9e-18 97.8 154 33.1
Ah.01g003110 Amaranthus hybridus HOM05D004255 ORTHO05D004815 3.2e-17 94.4 153 34.0
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 5.5e-17 93.6 179 35.2
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 5.5e-17 93.6 162 35.2
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 7.2e-17 93.2 163 33.1
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 9.4e-17 92.8 177 33.9
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 1.0e-15 89.4 81 55.6
PGSC0003DMG400015738 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.3e-15 88.2 202 31.7
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 3.0e-15 87.8 187 32.6
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 6.7e-15 86.7 142 35.2
Manes.11G149500 Manihot esculenta HOM05D004255 ORTHO05D004815 1.5e-14 85.5 161 34.8
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.0e-14 85.1 99 45.5
RcHm_v2.0_Chr5g0058061 Rosa chinensis HOM05D004255 ORTHO05D004815 4.8e-13 80.5 114 43.9
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 8.2e-13 79.7 59 61.0
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 1.2e-11 75.9 108 34.3
COL.COLO4_30932 Corchorus olitorius HOM05D000090 ORTHO05D004815 2.6e-11 74.7 88 45.5
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 4.5e-11 73.9 118 35.6
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 7.7e-11 73.2 80 45.0
BraA07t29569Z Brassica rapa HOM05D004255 ORTHO05D004815 2.9e-10 71.2 146 32.2
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 5.0e-10 70.5 98 36.7
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 2.1e-08 65.1 124 34.7
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 6.1e-08 63.5 120 33.3
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.0e-07 60.8 135 30.4
Dinv32694 Davidia involucrata HOM05D004255 ORTHO05D004815 6.8e-07 60.1 58 50.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 1.2e-06 59.3 58 50.0
AUR62029220 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.0e-06 58.5 68 39.7
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 2.6e-06 58.2 59 47.5
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 3.4e-06 57.8 184 28.8


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