Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.3e-301 1038.9 513 100.0
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.3e-292 1007.3 513 96.3
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 6.2e-283 976.9 513 93.2
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.3e-272 942.6 513 91.8
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 4.5e-233 811.2 508 76.8
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.6e-230 802.7 509 75.6
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 4.6e-230 801.2 506 77.3
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.7e-229 797.3 506 76.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.3e-228 795.0 513 75.8
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 5.7e-228 794.3 509 75.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 5.3e-226 787.7 507 75.7
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 6.9e-226 787.3 507 75.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 6.9e-226 787.3 514 74.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.0e-224 783.5 513 74.3
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 5.0e-224 781.2 511 73.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 5.0e-224 781.2 509 74.9
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.5e-224 780.4 509 74.1
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.5e-223 777.7 511 73.6
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 4.6e-222 774.6 508 74.4
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.6e-222 774.6 506 73.9
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.5e-220 768.8 507 73.8
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 7.4e-220 767.3 506 73.9
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.8e-219 765.4 511 73.2
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.7e-219 765.0 509 73.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.1e-218 761.9 509 73.5
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 4.1e-218 761.5 507 73.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 6.9e-218 760.8 507 73.2
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.0e-217 759.2 509 73.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.0e-216 756.9 512 72.5
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.3e-216 756.5 513 71.2
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.3e-216 756.5 512 71.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.7e-216 756.1 547 68.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.2e-216 755.7 505 73.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 3.8e-216 755.0 509 71.3
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.2e-215 751.9 513 71.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.5e-215 751.1 510 72.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 7.2e-215 750.7 510 71.6
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-214 750.0 512 71.7
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.9e-214 747.3 505 72.9
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.4e-213 746.5 547 68.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-213 746.1 505 72.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.8e-213 746.1 510 71.2
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.3e-213 745.7 508 71.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.3e-213 745.7 512 71.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.9e-213 745.0 512 69.7
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.0e-212 742.7 504 72.2
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.0e-212 742.7 505 71.9
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.3e-212 741.9 506 72.7
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 5.7e-212 741.1 506 72.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.3e-211 740.0 547 67.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-211 740.0 506 72.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.3e-211 740.0 506 72.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.2e-211 739.2 510 70.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-211 738.8 505 72.1
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.8e-211 738.8 506 70.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.7e-211 738.4 505 72.5
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 8.2e-211 737.3 507 71.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.2e-211 737.3 495 72.5
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.1e-210 736.9 506 72.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-210 736.1 505 72.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.4e-210 735.7 513 71.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.1e-210 735.3 522 69.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.1e-210 735.3 505 71.5
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.1e-210 734.9 507 72.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.3e-210 734.6 505 72.5
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 7.0e-210 734.2 509 70.3
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 2.6e-209 732.3 505 72.1
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.5e-209 731.5 505 72.3
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.0e-208 730.3 510 70.0
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.7e-208 729.6 525 67.2
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 2.2e-208 729.2 505 71.5
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-208 729.2 505 72.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.8e-208 728.4 505 71.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 5.0e-208 728.0 505 71.3
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-207 726.9 513 69.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.1e-207 726.9 505 72.1
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.5e-207 726.5 508 71.1
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-207 726.1 511 70.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.2e-207 724.2 511 69.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.7e-206 722.2 476 73.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.7e-206 721.5 505 69.7
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.7e-206 721.5 500 71.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.1e-206 721.1 500 71.8
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-205 719.9 514 68.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 5.2e-205 718.0 506 69.6
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.2e-205 718.0 470 74.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-204 716.8 483 73.7
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.1e-204 716.8 474 74.9
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.1e-204 716.8 600 61.8
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.0e-204 716.1 510 68.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.2e-203 712.6 474 73.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 4.8e-203 711.4 508 69.5
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.1e-202 710.3 511 68.3
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.1e-202 708.4 514 69.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.0e-200 703.7 509 69.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.9e-200 702.2 452 76.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 7.2e-199 697.6 512 65.8
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.8e-197 693.0 501 67.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 8.8e-197 690.6 513 65.5
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.8e-197 690.6 511 67.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.8e-197 690.6 511 68.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 2.0e-193 679.5 587 59.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-193 679.5 536 64.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.0e-193 679.5 507 67.9
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.2e-192 676.0 508 67.5
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.9e-192 675.6 565 62.1
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.8e-192 675.2 459 72.3
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 3.8e-192 675.2 510 63.5
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.6e-190 669.8 510 64.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 2.1e-190 669.5 498 67.5
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.8e-189 666.4 527 63.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.6e-188 662.5 512 64.1
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 7.5e-188 661.0 500 65.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 6.3e-187 657.9 513 62.6
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 8.3e-187 657.5 512 64.8
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 8.3e-187 657.5 510 65.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.4e-186 656.0 447 71.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.7e-184 649.8 500 63.6
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-184 649.4 526 63.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.9e-184 649.0 450 71.8
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 9.5e-183 644.0 470 68.1
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.8e-173 613.2 507 60.4
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.9e-168 595.5 400 71.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-167 594.0 402 70.9
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 4.9e-155 552.0 483 60.2
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 4.9e-155 552.0 542 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.4e-154 549.7 529 55.0
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 6.0e-153 545.0 663 47.5
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.7e-145 519.6 453 59.8
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.4e-138 497.3 416 59.1
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.0e-128 464.5 336 68.5
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.1e-127 461.1 508 49.8
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 7.4e-119 431.8 273 75.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 4.5e-116 422.5 271 77.5
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.9e-106 390.6 283 68.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.4e-88 331.3 243 67.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 5.9e-84 315.8 240 62.1
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.5e-82 309.3 211 69.2
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 4.0e-80 303.1 258 58.9
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 7.7e-76 288.9 242 61.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-72 278.5 501 37.3
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.1e-61 240.0 570 31.6
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.8e-55 219.5 387 35.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.3e-43 181.0 135 64.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.6e-42 176.4 186 52.2
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.9e-37 161.4 127 64.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 5.4e-37 159.8 106 74.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 6.0e-36 156.4 194 41.2
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.9e-32 142.5 247 38.5
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-31 142.1 112 58.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-31 141.0 247 38.1
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 3.5e-28 130.6 68 86.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-22 110.5 63 82.5
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-19 102.4 82 67.1
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.6e-18 95.9 166 28.9
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 4.5e-15 87.0 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.1e-12 78.2 76 55.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.4e-08 65.5 113 33.6
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-08 63.9 36 80.6
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 3.4e-07 60.8 211 27.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 4.5e-07 60.5 135 27.4
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-06 58.9 105 39.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.2e-06 58.2 106 34.9


User provided reference genes

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