Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G019750 Citrullus lanatus HOM05D000007 ORTHO05D000039 5.9e-64 247.3 118 100.0
ClCG10G019730 Citrullus lanatus HOM05D023299 ORTHO05D000039 1.8e-57 225.7 114 93.9
Sed0015533 Sechium edule HOM05D000007 ORTHO05D000039 1.4e-33 146.4 115 64.3
ClCG10G015170 Citrullus lanatus HOM05D000007 ORTHO05D000039 2.4e-33 145.6 119 63.0
CsaV3_3G036310 Cucumis sativus L. HOM05D000007 ORTHO05D000039 3.5e-32 141.7 120 57.5
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 2.3e-31 139.0 115 63.5
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 6.6e-31 137.5 119 57.1
MELO3C009392.2 Cucumis melo HOM05D000007 ORTHO05D000039 8.6e-31 137.1 119 60.5
CsaV3_3G036330 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.9e-30 136.0 119 59.7
MELO3C009397.2 Cucumis melo HOM05D000007 ORTHO05D000039 9.6e-30 133.7 121 60.3
MELO3C009400.2 Cucumis melo HOM05D000007 ORTHO05D000039 9.6e-30 133.7 121 60.3
CsaV3_3G036560 Cucumis sativus L. HOM05D000007 ORTHO05D000039 9.6e-30 133.7 135 54.8
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 4.7e-29 131.3 119 55.5
MELO3C009863.2 Cucumis melo HOM05D000007 ORTHO05D000039 6.2e-29 131.0 119 54.6
CsaV3_3G036420 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.1e-28 130.2 121 57.9
CsaV3_3G036400 Cucumis sativus L. HOM05D000001 ORTHO05D000039 4.0e-28 128.3 135 54.8
CsaV3_3G035340 Cucumis sativus L. HOM05D000007 ORTHO05D000039 5.2e-28 127.9 123 55.3
ClCG10G019800 Citrullus lanatus HOM05D000007 ORTHO05D000039 9.9e-27 123.6 103 59.2
CsaV3_3G036370 Cucumis sativus L. HOM05D001217 ORTHO05D001097 1.3e-26 123.2 135 52.6
Sed0002351 Sechium edule HOM05D000007 ORTHO05D000039 2.2e-26 122.5 124 58.9
CsaV3_3G036540 Cucumis sativus L. HOM05D000007 ORTHO05D000039 2.9e-26 122.1 115 56.5
Sed0008650 Sechium edule HOM05D000007 ORTHO05D000039 6.4e-26 120.9 113 54.0
Sed0025093 Sechium edule HOM05D000007 ORTHO05D000039 6.4e-26 120.9 113 54.0
Sed0022785 Sechium edule HOM05D000007 ORTHO05D000039 1.1e-25 120.2 114 55.3
CsaV3_3G036390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 2.4e-25 119.0 128 53.1
Sed0020962 Sechium edule HOM05D000007 ORTHO05D000039 3.2e-25 118.6 101 60.4
CsaV3_3G035370 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.2e-24 116.7 112 54.5
MELO3C009862.2 Cucumis melo HOM05D000007 ORTHO05D000039 5.1e-23 111.3 120 51.7
Sed0023240 Sechium edule HOM05D000007 ORTHO05D000039 4.3e-22 108.2 119 50.4
MELO3C034751.2 Cucumis melo HOM05D000007 ORTHO05D000039 2.1e-21 105.9 120 50.0
CsaV3_3G041370 Cucumis sativus L. HOM05D000007 ORTHO05D000039 2.4e-20 102.4 121 49.6
Sed0024872 Sechium edule HOM05D000007 ORTHO05D000039 2.9e-18 95.5 115 44.3
Sed0024390 Sechium edule HOM05D000007 ORTHO05D000039 6.4e-18 94.4 85 54.1
CsaV3_3G041350 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.2e-16 90.1 108 47.2
Sed0025339 Sechium edule HOM05D000007 ORTHO05D000039 1.2e-16 90.1 116 44.0
Sed0004788 Sechium edule HOM05D000007 ORTHO05D000039 2.1e-16 89.4 115 43.5
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 1.8e-15 86.3 116 41.4
Gohir.D12G088200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.9e-15 85.1 115 42.6
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 3.9e-15 85.1 115 42.6
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.5e-14 83.2 116 40.5
Gohir.A12G083765 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.3e-14 82.0 115 41.7
Sed0009611 Sechium edule HOM05D000007 ORTHO05D000039 7.4e-14 80.9 97 46.4
Thecc.04G089800 Theobroma cacao HOM05D000007 ORTHO05D000039 1.6e-13 79.7 112 41.1
CsaV3_3G041340 Cucumis sativus L. HOM05D000007 ORTHO05D000039 6.2e-13 77.8 73 54.8
Gohir.D04G045600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.4e-12 75.9 115 36.5
Gorai.012G050800 Gossypium raimondii HOM05D000007 ORTHO05D000039 5.3e-12 74.7 115 36.5
Dinv06511 Davidia involucrata HOM05D000007 ORTHO05D000039 6.9e-12 74.3 112 37.5
Sed0024551 Sechium edule HOM05D000007 ORTHO05D000039 6.9e-12 74.3 109 42.2
Gohir.A05G369700 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.2e-11 73.6 115 36.5
MD15G1153400 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-11 73.6 115 42.6
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-11 73.2 118 39.0
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-11 73.2 117 38.5
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 2.0e-11 72.8 109 38.5
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 4.5e-11 71.6 110 39.1
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 7.6e-11 70.9 109 42.2
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 9.9e-11 70.5 118 32.2
FvH4_6g06670 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-10 70.1 111 36.0
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 1.7e-10 69.7 108 35.2
CANSAT54G0074 Cannabis sativa HOM05D000007 ORTHO05D000039 2.2e-10 69.3 113 34.5
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-10 69.3 109 33.9
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 2.9e-10 68.9 111 33.3
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.9e-10 68.9 118 31.4
RcHm_v2.0_Chr3g0456131 Rosa chinensis HOM05D000007 ORTHO05D000039 2.9e-10 68.9 115 36.5
FAN14G5073 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.4e-10 67.8 109 34.9
Duzib147G0121 Durio zibethinus HOM05D000007 ORTHO05D000039 1.1e-09 67.0 116 34.5
MSTRG.14886 Avicennia marina HOM05D000007 ORTHO05D000039 1.4e-09 66.6 104 36.5
Thecc.04G089700 Theobroma cacao HOM05D000007 ORTHO05D000039 1.4e-09 66.6 114 35.1
MD17G1256100 Malus domestica HOM05D000007 ORTHO05D000039 2.4e-09 65.9 111 32.4
QL04p029261 Quercus lobata HOM05D000007 ORTHO05D000039 2.4e-09 65.9 86 44.2
MD09G1130700 Malus domestica HOM05D000007 ORTHO05D000039 3.2e-09 65.5 111 40.5
Dinv01035 Davidia involucrata HOM05D000007 ORTHO05D000039 4.2e-09 65.1 109 42.2
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 4.2e-09 65.1 112 33.9
Dinv34983 Davidia involucrata HOM05D000007 ORTHO05D000039 5.5e-09 64.7 110 34.5
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 5.5e-09 64.7 91 36.3
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 5.5e-09 64.7 111 32.4
CANSAT54G1614 Cannabis sativa HOM05D000007 ORTHO05D000039 7.1e-09 64.3 117 37.6
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 7.1e-09 64.3 112 33.9
FvH4_6g06831 Fragaria vesca HOM05D000007 ORTHO05D000039 7.1e-09 64.3 87 39.1
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 7.1e-09 64.3 114 35.1
Hma1.2p1_0901F.1_g234670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 9.3e-09 63.9 67 47.8
Hma1.2p1_0901F.1_g234685 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 9.3e-09 63.9 67 47.8
Hma1.2p1_1150F.1_g261840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 9.3e-09 63.9 67 47.8
Prupe.3G110000 Prunus persica HOM05D000007 ORTHO05D000039 1.2e-08 63.5 114 34.2
FvH4_6g06791 Fragaria vesca HOM05D000007 ORTHO05D000039 1.6e-08 63.2 110 35.5
Prupe.6G318300 Prunus persica HOM05D000007 ORTHO05D000039 1.6e-08 63.2 117 35.0
QL05p044233 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-08 62.8 86 43.0
RcHm_v2.0_Chr3g0456091 Rosa chinensis HOM05D000007 ORTHO05D000039 2.1e-08 62.8 65 49.2
TWI60G1487 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.1e-08 62.8 112 32.1
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 2.7e-08 62.4 92 39.1
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 2.7e-08 62.4 114 33.3
TWI53G1032 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.7e-08 62.4 111 34.2
Dinv06537 Davidia involucrata HOM05D000007 ORTHO05D000039 3.5e-08 62.0 87 35.6
MD17G1252000 Malus domestica HOM05D000007 ORTHO05D000039 3.5e-08 62.0 89 36.0
MD17G1252800 Malus domestica HOM05D000007 ORTHO05D000039 3.5e-08 62.0 89 36.0
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 3.5e-08 62.0 113 31.0
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 4.6e-08 61.6 114 36.0
MD00G1054600 Malus domestica HOM05D000007 ORTHO05D000039 6.0e-08 61.2 110 33.6
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 6.0e-08 61.2 89 36.0
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 6.0e-08 61.2 92 38.0
QL05p044215 Quercus lobata HOM05D000007 ORTHO05D000039 6.0e-08 61.2 86 43.0
CSS0003262 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 7.9e-08 60.8 105 35.2
Dinv04466 Davidia involucrata HOM05D000007 ORTHO05D000039 7.9e-08 60.8 81 38.3
Dinv06538 Davidia involucrata HOM05D000007 ORTHO05D000039 7.9e-08 60.8 83 34.9
TWI59G0519 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 7.9e-08 60.8 116 31.0
Actinidia10577 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.0e-07 60.5 76 44.7
QL04p029136 Quercus lobata HOM05D000007 ORTHO05D000039 1.0e-07 60.5 87 40.2
RcHm_v2.0_Chr7g0233181 Rosa chinensis HOM05D003032 ORTHO05D000039 1.0e-07 60.5 117 29.9
SalBow7G3538 Salvia bowleyana HOM05D000007 ORTHO05D000039 1.0e-07 60.5 91 35.2
MD17G1256000 Malus domestica HOM05D000007 ORTHO05D000039 1.3e-07 60.1 83 38.6
QL04p026044 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-07 60.1 112 34.8
SalBow1G7567 Salvia bowleyana HOM05D000007 ORTHO05D000039 1.3e-07 60.1 91 35.2
Gohir.D10G123400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.8e-07 59.7 113 30.1
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.8e-07 59.7 80 33.8
TWI34G1066 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.8e-07 59.7 111 33.3
QL03p020743 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-07 59.3 96 34.4
QL03p020817 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-07 59.3 96 34.4
QL03p021893 Quercus lobata HOM05D000007 ORTHO05D000039 2.3e-07 59.3 96 34.4
vmacro05999 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.3e-07 59.3 85 40.0
CiPaw.14G019500 Carya illinoinensis HOM05D000007 ORTHO05D000039 3.0e-07 58.9 114 30.7
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 3.0e-07 58.9 94 35.1
QL08p013898 Quercus lobata HOM05D000007 ORTHO05D000039 3.0e-07 58.9 98 33.7
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 3.0e-07 58.9 88 42.0
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 3.9e-07 58.5 115 33.9
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 3.9e-07 58.5 109 30.3
PGR042G0166 Punica granatum HOM05D000007 ORTHO05D000039 3.9e-07 58.5 104 27.9
QL04p029093 Quercus lobata HOM05D000007 ORTHO05D000039 5.1e-07 58.2 88 38.6
MD17G1251100 Malus domestica HOM05D000007 ORTHO05D000039 6.7e-07 57.8 91 36.3
Peaxi162Scf00172g00071 Petunia axillaris HOM05D000007 ORTHO05D000039 6.7e-07 57.8 98 37.8
Thecc.09G278300 Theobroma cacao HOM05D000007 ORTHO05D000039 6.7e-07 57.8 111 30.6
Lj8C355T6 Lonicera japonica HOM05D000007 ORTHO05D000039 8.7e-07 57.4 80 35.0
MD17G1252200 Malus domestica HOM05D000007 ORTHO05D000039 8.7e-07 57.4 89 32.6
MD17G1254200 Malus domestica HOM05D000007 ORTHO05D000039 8.7e-07 57.4 90 37.8
MD17G1254700 Malus domestica HOM05D000007 ORTHO05D000039 8.7e-07 57.4 89 36.0
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 8.7e-07 57.4 113 31.0
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 8.7e-07 57.4 88 36.4
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 8.7e-07 57.4 88 36.4
CANSAT54G2366 Cannabis sativa HOM05D000007 ORTHO05D000039 1.1e-06 57.0 79 38.0
vmacro23298 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.1e-06 57.0 116 26.7
FvH4_6g06663 Fragaria vesca HOM05D000007 ORTHO05D000039 1.5e-06 56.6 115 34.8
TWI73G0529 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.5e-06 56.6 83 36.1
CiPaw.07G024100 Carya illinoinensis HOM05D000007 ORTHO05D000039 1.9e-06 56.2 96 31.2
CiPaw.07G024300 Carya illinoinensis HOM05D000007 ORTHO05D000039 1.9e-06 56.2 96 31.2
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 1.9e-06 56.2 114 32.5
Medtr6g478230 Medicago truncatula HOM05D000007 ORTHO05D000039 1.9e-06 56.2 114 33.3
Nitab4.5_0000211g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.9e-06 56.2 98 36.7
TWI59G1353 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.9e-06 56.2 110 33.6
Ciclev10011921m.g Citrus clementina HOM05D000007 ORTHO05D000039 2.5e-06 55.8 116 31.0
MD00G1149800 Malus domestica HOM05D000007 ORTHO05D000039 2.5e-06 55.8 109 30.3
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.3e-06 55.5 85 36.5
Duzib150G0476 Durio zibethinus HOM05D000007 ORTHO05D000039 3.3e-06 55.5 111 29.7
Migut.M00112 Erythranthe guttata HOM05D000007 ORTHO05D000039 3.3e-06 55.5 104 27.9
FvH4_2g10221 Fragaria vesca HOM05D000007 ORTHO05D000039 3.3e-06 55.5 107 31.8
FAN02G1364 Fragaria x ananassa HOM05D000007 ORTHO05D015662 3.3e-06 55.5 77 39.0
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 4.3e-06 55.1 89 38.2
MD17G1256300 Malus domestica HOM05D000007 ORTHO05D000039 4.3e-06 55.1 83 36.1
TWI31G1434 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 4.3e-06 55.1 112 30.4
vmacro10317 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.3e-06 55.1 67 43.3
arahy.Tifrunner.gnm1.ann1.L34NFV Arachis hypogaea HOM05D000007 ORTHO05D000039 7.4e-06 54.3 117 25.6
AUR62011562 Chenopodium quinoa HOM05D000007 ORTHO05D000039 7.4e-06 54.3 84 36.9
Lj8P354T16 Lonicera japonica HOM05D000007 ORTHO05D000039 7.4e-06 54.3 80 35.0
Lj8P355T18 Lonicera japonica HOM05D000007 ORTHO05D000039 7.4e-06 54.3 80 35.0
MD17G1255900 Malus domestica HOM05D000007 ORTHO05D000039 7.4e-06 54.3 109 30.3
TWI63G0287 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 7.4e-06 54.3 85 35.3
FvH4_6g06590 Fragaria vesca HOM05D000007 ORTHO05D000039 9.6e-06 53.9 75 34.7
FvH4_6g06850 Fragaria vesca HOM05D000007 ORTHO05D000039 9.6e-06 53.9 120 27.5
FAN05G0889 Fragaria x ananassa HOM05D000007 ORTHO05D000039 9.6e-06 53.9 75 34.7
QL03p020720 Quercus lobata HOM05D000007 ORTHO05D000039 9.6e-06 53.9 67 43.3
QL03p021906 Quercus lobata HOM05D000007 ORTHO05D000039 9.6e-06 53.9 67 43.3


User provided reference genes

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