Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 2.1e-97 359.0 180 100.0
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 3.5e-76 288.5 158 88.6
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 6.0e-76 287.7 158 88.6
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.1e-72 276.9 156 83.3
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 3.1e-72 275.4 158 81.6
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 5.5e-69 264.6 156 80.8
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.2e-68 263.5 177 74.6
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.7e-68 262.3 156 78.2
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 5.1e-67 258.1 156 76.3
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 6.7e-67 257.7 156 78.2
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 8.7e-67 257.3 156 78.2
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 1.1e-66 256.9 156 76.9
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 3.3e-66 255.4 156 78.2
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 3.3e-66 255.4 155 76.8
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 4.3e-66 255.0 156 76.9
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 5.7e-66 254.6 151 80.8
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 5.7e-66 254.6 156 76.9
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 5.7e-66 254.6 156 76.9
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 9.7e-66 253.8 179 70.9
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 1.3e-65 253.4 149 79.9
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 1.3e-65 253.4 152 78.9
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 2.2e-65 252.7 156 77.6
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 2.2e-65 252.7 156 76.9
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 2.2e-65 252.7 156 76.9
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 2.2e-65 252.7 156 78.2
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.4e-64 250.0 156 76.3
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.4e-64 250.0 155 79.4
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 3.1e-64 248.8 152 76.3
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 4.1e-64 248.4 152 77.6
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 4.1e-64 248.4 150 78.0
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 5.3e-64 248.1 149 80.5
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 1.2e-63 246.9 154 77.9
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 1.2e-63 246.9 156 75.6
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 1.2e-63 246.9 163 74.2
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.2e-63 246.9 156 75.0
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 1.2e-63 246.9 142 82.4
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 1.5e-63 246.5 159 71.1
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.5e-63 246.5 156 76.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.5e-63 246.5 156 76.3
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 1.5e-63 246.5 150 78.0
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.5e-63 246.5 156 75.6
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 3.4e-63 245.4 173 68.2
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 4.5e-63 245.0 156 75.6
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 7.7e-63 244.2 154 76.0
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 7.7e-63 244.2 148 79.7
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 7.7e-63 244.2 156 73.7
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.3e-62 243.4 150 76.0
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 1.3e-62 243.4 152 77.0
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 1.7e-62 243.0 156 74.4
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.7e-62 243.0 170 67.1
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 2.2e-62 242.7 156 73.1
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 2.2e-62 242.7 156 73.1
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 2.9e-62 242.3 151 75.5
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 3.8e-62 241.9 150 77.3
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 5.0e-62 241.5 156 74.4
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 6.5e-62 241.1 150 74.7
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 6.5e-62 241.1 156 74.4
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 8.5e-62 240.7 156 73.7
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.1e-61 240.4 158 72.8
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 1.1e-61 240.4 156 73.1
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 1.1e-61 240.4 155 74.8
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 1.9e-61 239.6 158 73.4
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 1.9e-61 239.6 169 66.9
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.5e-61 239.2 156 72.4
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 4.2e-61 238.4 156 72.4
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 5.5e-61 238.0 156 72.4
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 9.4e-61 237.3 153 71.2
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 9.4e-61 237.3 151 74.2
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.2e-60 236.9 147 75.5
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.2e-60 236.9 156 73.1
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 1.6e-60 236.5 143 76.2
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 2.1e-60 236.1 152 73.0
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.1e-60 236.1 166 69.3
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 2.7e-60 235.7 148 76.4
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 3.6e-60 235.3 152 73.0
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 3.6e-60 235.3 151 72.8
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 4.6e-60 235.0 146 75.3
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 4.6e-60 235.0 150 73.3
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 7.9e-60 234.2 155 71.6
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.8e-59 233.0 151 72.2
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.3e-59 232.6 145 75.2
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 3.0e-59 232.3 174 66.1
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.1e-59 231.5 151 71.5
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 8.8e-59 230.7 150 71.3
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 8.2e-57 224.2 157 67.5
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 2.4e-56 222.6 158 67.1
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 6.9e-56 221.1 160 66.2
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 9.1e-56 220.7 159 66.7
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 9.1e-56 220.7 150 68.0
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 1.5e-55 219.9 160 65.0
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 2.0e-55 219.5 145 71.7
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 3.4e-55 218.8 150 67.3
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 3.4e-55 218.8 155 66.5
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 7.7e-55 217.6 143 71.3
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 2.2e-54 216.1 158 64.6
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 2.9e-54 215.7 145 69.0
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 6.5e-54 214.5 160 63.8
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 1.1e-53 213.8 159 64.8
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 3.2e-53 212.2 159 63.5
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 4.2e-53 211.8 158 63.3
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 4.2e-53 211.8 158 63.3
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 4.2e-53 211.8 159 63.5
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 7.2e-53 211.1 158 62.0
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 3.6e-52 208.8 127 80.3
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 4.7e-52 208.4 158 61.4
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 7.9e-52 207.6 160 61.2
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.0e-51 205.7 159 64.2
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.5e-50 203.4 145 64.1
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 5.7e-50 201.4 151 60.3
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 1.7e-49 199.9 144 63.9
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 4.1e-48 195.3 142 62.7
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 3.5e-47 192.2 159 61.6
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.0e-46 190.7 141 60.3
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 2.9e-46 189.1 129 73.6
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 4.7e-44 181.8 122 71.3
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 2.7e-39 166.0 142 54.2
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 7.7e-39 164.5 116 72.4
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 7.7e-39 164.5 131 58.8
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.1e-37 160.6 158 45.6
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 2.5e-37 159.5 97 74.2
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 7.2e-37 157.9 162 47.5
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 8.0e-36 154.5 146 49.3
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 3.0e-35 152.5 142 51.4
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 5.7e-34 148.3 135 58.5
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 4.1e-32 142.1 100 67.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 7.0e-32 141.4 142 52.1
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 4.2e-29 132.1 143 49.7
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.2e-28 130.6 100 60.0
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 5.2e-27 125.2 141 46.8
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 1.7e-25 120.2 144 43.1
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 4.1e-24 115.5 149 45.0
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 2.7e-23 112.8 78 67.9
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 1.5e-21 107.1 85 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 6.1e-20 101.7 84 52.4


User provided reference genes

Program Settings