Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 9.3e-101 370.2 181 100.0
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.3e-62 243.4 150 81.3
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.0e-51 205.7 107 92.5
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 5.2e-51 204.9 108 88.9
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.0e-43 179.1 107 77.6
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.2e-42 177.2 107 77.6
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.0e-42 176.4 107 76.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 3.7e-41 172.2 107 74.8
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 3.5e-39 165.6 107 72.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.5e-39 165.6 181 53.6
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 4.5e-39 165.2 108 72.2
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.3e-38 163.7 110 69.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.3e-38 162.9 103 73.8
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 3.9e-38 162.2 107 72.0
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.9e-37 159.8 108 66.7
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.3e-37 158.7 107 71.0
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.6e-37 158.3 108 69.4
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 5.6e-37 158.3 108 64.8
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 7.3e-37 157.9 108 71.3
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 7.3e-37 157.9 107 66.4
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.2e-36 157.1 107 66.4
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.2e-36 157.1 114 67.5
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.2e-36 157.1 108 67.6
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.6e-36 156.8 108 68.5
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 6.1e-36 154.8 108 68.5
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 6.1e-36 154.8 108 68.5
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.0e-35 154.1 108 65.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.4e-35 153.7 108 66.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 1.4e-35 153.7 107 66.4
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.8e-35 153.3 107 65.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.3e-35 152.9 108 68.5
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 5.2e-35 151.8 108 66.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 5.2e-35 151.8 107 63.6
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 5.2e-35 151.8 107 67.3
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.2e-34 150.6 107 65.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.2e-34 150.6 107 67.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.2e-34 150.6 108 65.7
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.2e-34 150.6 108 64.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-34 150.6 146 54.1
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.5e-34 150.2 108 64.8
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 2.0e-34 149.8 109 63.3
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.6e-34 149.4 109 66.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.6e-34 149.4 107 67.3
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 3.4e-34 149.1 107 64.5
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.4e-34 149.1 109 61.5
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.4e-34 148.7 107 60.7
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 5.8e-34 148.3 108 66.7
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 5.8e-34 148.3 107 62.6
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 7.5e-34 147.9 107 61.7
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 9.8e-34 147.5 107 65.4
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 9.8e-34 147.5 107 63.6
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.3e-33 147.1 107 66.4
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.3e-33 147.1 117 56.4
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 2.2e-33 146.4 108 66.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.2e-33 146.4 107 64.5
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 2.9e-33 146.0 108 64.8
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.9e-33 146.0 110 61.8
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.9e-33 145.2 108 61.1
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.3e-33 144.4 107 62.6
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 8.3e-33 144.4 107 62.6
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 8.3e-33 144.4 107 62.6
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 8.3e-33 144.4 108 63.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-32 144.1 108 62.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.1e-32 144.1 108 63.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.1e-32 144.1 108 63.0
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-32 143.7 108 61.1
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.9e-32 143.3 107 62.6
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.9e-32 143.3 109 61.5
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 2.4e-32 142.9 107 61.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.4e-32 142.9 107 59.8
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.4e-32 142.9 106 61.3
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.2e-32 142.5 107 58.9
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 3.2e-32 142.5 108 63.0
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 4.1e-32 142.1 108 63.9
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 5.4e-32 141.7 99 70.7
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 5.4e-32 141.7 106 59.4
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 7.0e-32 141.4 107 58.9
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 7.0e-32 141.4 107 58.9
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 7.0e-32 141.4 103 64.1
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.2e-31 140.6 107 58.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.2e-31 140.6 111 56.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.6e-31 140.2 107 57.9
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.0e-31 139.8 108 62.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.0e-31 139.8 107 58.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.0e-31 139.8 107 59.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 2.0e-31 139.8 107 62.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 2.7e-31 139.4 107 57.9
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.5e-31 139.0 108 60.2
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 4.6e-31 138.7 111 57.7
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.6e-31 138.7 107 59.8
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 6.0e-31 138.3 107 57.9
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.0e-30 137.5 107 61.7
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-30 137.1 85 81.2
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.7e-30 136.7 108 61.1
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.7e-30 136.7 107 59.8
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.3e-30 136.3 109 62.4
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.3e-30 136.3 107 55.1
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.0e-30 136.0 107 58.9
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.9e-30 135.6 107 59.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 3.9e-30 135.6 119 55.5
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 3.9e-30 135.6 108 59.3
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.3e-29 132.5 108 59.3
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.3e-29 132.5 108 60.2
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.3e-29 132.1 108 58.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.3e-29 131.3 107 57.0
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.1e-28 129.8 107 51.4
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 6.2e-28 128.3 107 57.0
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 8.0e-28 127.9 112 54.5
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.1e-27 127.5 108 55.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.1e-27 125.9 108 54.6
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 3.1e-27 125.9 111 55.9
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.0e-27 125.6 90 66.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 5.2e-27 125.2 108 55.6
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.2e-27 125.2 99 58.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 5.2e-27 125.2 98 58.2
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 6.8e-27 124.8 95 60.0
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.2e-26 124.0 90 63.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.2e-26 124.0 90 63.3
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-26 123.6 108 54.6
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.0e-26 123.2 108 53.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.0e-26 123.2 85 64.7
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.6e-26 122.9 85 65.9
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 2.6e-26 122.9 90 62.2
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 3.4e-26 122.5 95 58.9
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.9e-25 119.4 107 54.2
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.7e-25 119.0 91 61.5
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.7e-25 119.0 85 62.4
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.7e-25 119.0 107 48.6
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 8.3e-25 117.9 88 61.4
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.9e-24 116.7 88 59.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.1e-24 115.5 107 45.8
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.1e-23 113.2 86 59.3
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.7e-23 112.8 86 61.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.5e-23 112.5 85 62.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.5e-23 112.5 85 62.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 6.0e-23 111.7 107 56.1
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 1.0e-22 110.9 91 54.9
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.7e-22 110.2 86 60.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.3e-22 109.8 87 59.8
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.5e-21 107.1 85 57.6
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 7.3e-21 104.8 76 57.9
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 8.1e-20 101.3 87 51.7
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.8e-19 100.1 87 52.9
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 4.0e-19 99.0 108 48.1
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 6.8e-19 98.2 65 73.8
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 9.9e-18 94.4 106 42.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.7e-17 92.4 85 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.1e-16 90.9 109 41.3
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 9.2e-16 87.8 109 40.4
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.5e-15 85.9 73 61.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 4.6e-15 85.5 81 51.9
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.3e-14 83.2 87 51.7
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.1e-13 80.9 111 42.3
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 2.8e-12 76.3 91 42.9
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 8.1e-12 74.7 56 62.5
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.2e-10 70.9 109 36.7
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.7e-09 67.0 109 33.9
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 4.6e-07 58.9 64 42.2
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 4.6e-07 58.9 64 42.2
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 3.0e-06 56.2 41 58.5


User provided reference genes

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