Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.5e-84 316.2 169 100.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.2e-78 296.6 169 94.1
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 6.7e-77 290.8 169 92.9
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.5e-55 219.2 169 74.6
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 2.7e-54 215.7 165 78.8
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 7.5e-36 154.5 170 55.3
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 6.3e-35 151.4 177 54.8
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 3.1e-34 149.1 165 55.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 3.5e-33 145.6 188 48.4
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 5.9e-33 144.8 165 51.5
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 7.8e-33 144.4 170 52.9
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-32 143.7 169 53.8
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.9e-32 142.5 166 50.6
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.9e-31 139.8 169 52.7
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.3e-31 138.7 183 50.8
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 9.5e-31 137.5 169 50.9
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-30 137.1 176 52.3
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 2.8e-30 136.0 171 51.5
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 2.3e-29 132.9 170 51.2
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.5e-28 130.2 167 52.1
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 3.4e-28 129.0 165 52.7
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 3.4e-28 129.0 163 50.3
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.8e-28 128.3 175 49.7
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 7.5e-28 127.9 170 50.6
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.7e-27 126.7 185 46.5
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.9e-26 123.2 167 49.7
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.4e-26 122.9 161 50.3
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 1.6e-25 120.2 171 46.8
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.6e-25 120.2 166 50.6
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.7e-25 119.4 166 48.8
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.0e-25 118.2 166 48.8
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.1e-23 114.0 169 47.9
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.5e-23 112.8 174 46.0
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.3e-23 112.5 169 46.7
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.3e-23 112.5 169 46.7
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.6e-22 110.2 143 53.1
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.1e-22 109.8 121 54.5
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 6.2e-22 108.2 165 45.5
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 8.0e-22 107.8 172 48.3
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.8e-21 106.7 170 47.1
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 6.8e-21 104.8 189 43.4
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 8.9e-21 104.4 114 56.1
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-20 104.0 168 44.6
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.2e-20 104.0 169 47.3
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.6e-20 102.8 154 46.1
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 2.6e-20 102.8 158 46.2
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 4.4e-20 102.1 155 50.3
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 4.4e-20 102.1 167 44.9
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.5e-20 101.3 157 45.2
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.3e-19 100.5 174 45.4
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.9e-19 99.4 156 49.4
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.9e-19 98.6 176 41.5
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 8.3e-19 97.8 148 45.9
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 8.3e-19 97.8 176 41.5
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.9e-18 96.7 119 52.9
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 3.2e-18 95.9 167 47.3
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 1.2e-17 94.0 158 47.5
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.2e-17 94.0 138 47.1
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 1.6e-17 93.6 160 41.2
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.7e-17 92.8 169 40.8
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 7.8e-17 91.3 146 49.3
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 1.0e-16 90.9 160 41.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.3e-16 90.5 169 42.0
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 5.1e-16 88.6 106 50.9
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.5e-15 87.0 84 58.3
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.5e-15 86.3 93 58.1
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 2.5e-15 86.3 183 37.2
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 4.3e-15 85.5 98 51.0
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 5.6e-15 85.1 109 49.5
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 1.6e-14 83.6 167 40.7
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 2.1e-14 83.2 158 43.7
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 2.8e-14 82.8 104 44.2
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.6e-14 82.4 86 61.6
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 6.2e-14 81.6 134 48.5
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 6.2e-14 81.6 155 38.7
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 8.1e-14 81.3 164 42.1
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 1.1e-13 80.9 86 61.6
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 1.8e-13 80.1 141 44.7
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 5.2e-13 78.6 160 41.2
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 6.8e-13 78.2 148 43.9
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.2e-12 77.4 164 40.9
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 2.0e-12 76.6 86 55.8
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 3.4e-12 75.9 114 50.0
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 4.4e-12 75.5 88 56.8
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 5.8e-12 75.1 143 41.3
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 1.3e-11 73.9 143 40.6
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 1.7e-11 73.6 50 68.0
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 2.2e-11 73.2 142 40.8
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 2.2e-11 73.2 172 38.4
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 2.2e-11 73.2 111 45.9
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 4.9e-11 72.0 155 39.4
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 1.4e-10 70.5 162 38.3
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.4e-10 70.5 110 42.7
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 3.2e-10 69.3 70 65.7
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 4.1e-10 68.9 153 38.6
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 5.4e-10 68.6 136 40.4
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 9.2e-10 67.8 113 38.9
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 9.2e-10 67.8 113 39.8
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 1.2e-09 67.4 87 54.0
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 1.2e-09 67.4 100 41.0
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.2e-09 67.4 80 52.5
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.2e-09 67.4 115 45.2
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 1.6e-09 67.0 123 45.5
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 1.6e-09 67.0 156 38.5
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 4.6e-09 65.5 156 37.8
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 6.0e-09 65.1 94 51.1
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 1.0e-08 64.3 136 47.1
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 1.0e-08 64.3 136 47.1
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 1.0e-08 64.3 108 40.7
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 1.7e-08 63.5 156 37.2
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 1.7e-08 63.5 112 38.4
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 1.7e-08 63.5 112 38.4
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 2.3e-08 63.2 64 59.4
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 3.0e-08 62.8 143 38.5
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 3.0e-08 62.8 145 37.9
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 3.0e-08 62.8 86 53.5
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 3.9e-08 62.4 156 39.1
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 5.1e-08 62.0 58 56.9
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 5.1e-08 62.0 47 63.8
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 1.1e-07 60.8 121 44.6
Cfa009970 Carpinus fangiana HOM05D021165 ORTHO05D006261 1.1e-07 60.8 78 47.4
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 1.1e-07 60.8 104 50.0
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 1.5e-07 60.5 108 42.6
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 1.9e-07 60.1 137 38.0
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 1.9e-07 60.1 140 37.9
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 2.5e-07 59.7 136 46.3
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 2.5e-07 59.7 136 46.3
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 2.5e-07 59.7 90 47.8
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 2.5e-07 59.7 150 38.0
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 3.3e-07 59.3 137 48.2
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.3e-07 59.3 108 40.7
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 4.3e-07 58.9 64 57.8
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 5.6e-07 58.5 71 47.9
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 5.6e-07 58.5 150 32.7
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 5.6e-07 58.5 47 61.7
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 9.5e-07 57.8 113 43.4
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 1.2e-06 57.4 67 55.2
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 1.6e-06 57.0 116 47.4
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 1.6e-06 57.0 62 58.1
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.1e-06 56.6 96 39.6
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.1e-06 56.6 94 42.6
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 2.8e-06 56.2 72 50.0
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 3.6e-06 55.8 66 53.0
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.6e-06 55.8 66 53.0
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.7e-06 55.5 94 41.5
Ciclev10029945m.g Citrus clementina HOM05D021165 ORTHO05D006261 6.2e-06 55.1 102 36.3
PSO541G6549 Papaver somniferum HOM05D008821 ORTHO05D010464 6.2e-06 55.1 102 40.2


User provided reference genes

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