Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 4.0e-243 844.3 425 100.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 6.8e-211 737.3 427 86.9
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 2.6e-194 682.2 394 89.1
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.4e-187 659.1 414 82.9
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.3e-158 563.5 400 70.8
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.6e-151 540.0 418 67.5
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.6e-151 540.0 413 65.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.6e-151 540.0 429 66.2
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 3.6e-151 538.9 398 69.1
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 7.9e-151 537.7 400 68.2
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.8e-150 536.6 425 67.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-150 536.2 400 68.0
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-149 533.5 400 67.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 2.5e-149 532.7 404 67.3
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 4.3e-149 531.9 398 66.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 4.1e-147 525.4 427 66.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.9e-147 524.6 423 64.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 9.1e-147 524.2 423 65.0
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.6e-146 522.7 410 64.4
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.4e-146 522.3 397 66.8
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.3e-145 520.4 431 64.5
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 5.0e-145 518.5 397 66.2
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.5e-145 517.7 412 63.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.5e-144 516.2 454 61.2
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.7e-143 512.7 398 65.3
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 3.6e-143 512.3 395 65.8
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.4e-142 510.4 394 65.5
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 8.2e-140 501.1 396 66.2
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 4.1e-139 498.8 413 64.4
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 4.1e-139 498.8 420 62.6
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.1e-139 497.7 382 68.3
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 3.4e-138 495.7 398 66.1
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 4.5e-138 495.4 428 62.9
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 7.7e-138 494.6 422 62.1
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 7.7e-138 494.6 403 64.5
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-137 493.4 398 65.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 3.8e-137 492.3 473 56.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.1e-136 490.7 423 62.4
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.9e-136 490.0 405 63.0
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.2e-136 489.2 423 62.2
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.6e-135 486.9 405 62.7
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.7e-135 486.1 425 60.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.7e-135 485.3 420 60.7
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.8e-134 483.4 446 60.5
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.8e-134 483.4 406 61.8
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 5.2e-134 481.9 415 62.2
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 6.7e-134 481.5 420 60.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 4.4e-133 478.8 414 63.0
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.7e-132 475.7 429 60.4
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 6.3e-132 474.9 410 61.7
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.4e-131 473.8 340 70.6
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.4e-131 473.8 400 62.0
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.3e-129 467.2 424 59.9
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.5e-128 463.0 420 58.8
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 3.2e-128 462.6 406 60.6
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 9.4e-128 461.1 425 60.7
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 2.1e-127 459.9 420 58.6
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 3.6e-127 459.1 396 60.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.4e-126 457.2 395 61.0
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.8e-126 456.8 415 60.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 5.2e-126 455.3 398 62.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.2e-125 454.1 407 58.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.7e-125 451.8 406 59.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 5.7e-125 451.8 406 59.9
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.2e-124 449.9 369 65.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.3e-124 448.4 406 58.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-123 447.2 399 59.4
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.4e-123 447.2 399 59.4
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.4e-123 446.4 382 59.9
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.1e-123 446.0 399 59.1
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 4.1e-123 445.7 399 59.1
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.1e-123 445.7 327 69.7
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.5e-122 442.2 400 59.2
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.5e-122 442.2 374 61.8
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.0e-121 441.0 413 56.2
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.8e-121 439.1 424 56.6
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-120 437.6 425 56.9
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.5e-120 437.2 407 57.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.5e-120 437.2 442 55.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.5e-120 437.2 416 56.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.2e-120 435.6 425 56.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 9.4e-120 434.5 440 55.2
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.6e-119 432.6 425 56.2
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 3.0e-118 429.5 356 61.5
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.0e-117 426.8 416 56.2
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.4e-115 419.9 427 55.7
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.6e-114 417.2 347 63.7
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.6e-114 417.2 428 55.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.5e-114 415.6 328 65.2
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.2e-112 409.1 391 58.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 7.2e-112 408.3 402 57.0
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 9.5e-112 407.9 344 64.0
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 6.1e-111 405.2 427 56.4
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 4.0e-110 402.5 321 64.8
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.3e-108 397.5 404 55.4
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.8e-108 396.4 372 60.5
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.4e-107 394.0 427 53.4
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-105 387.5 283 70.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 8.6e-105 384.8 397 53.9
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.5e-104 383.3 348 59.5
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.8e-102 377.1 306 64.7
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.9e-102 374.8 299 66.2
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.7e-100 370.5 283 68.6
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.7e-97 360.5 339 59.3
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.9e-96 357.1 350 57.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 9.8e-93 344.7 453 47.0
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.3e-92 344.4 313 60.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.2e-87 327.8 330 55.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.8e-82 308.5 372 48.1
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.4e-70 271.2 222 65.3
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 5.4e-67 259.2 213 60.1
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 4.0e-62 243.0 424 38.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.3e-55 221.5 406 37.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 8.1e-55 218.8 129 85.3
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.4e-51 208.0 428 35.0
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.2e-50 204.9 325 40.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.9e-50 202.2 149 73.2
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.2e-45 188.3 124 76.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.4e-25 121.7 94 69.1
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.5e-24 118.2 101 61.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.0e-24 117.9 95 69.5
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.4e-22 111.7 99 63.6
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 7.0e-22 109.4 89 65.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.7e-20 104.8 153 45.1
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 2.2e-20 104.4 106 52.8
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.6e-18 98.2 113 40.7
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 7.5e-08 62.8 166 29.5


User provided reference genes

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