Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G018110 Citrullus lanatus HOM05D007830 ORTHO05D009947 2.3e-251 872.5 726 100.0
MELO3C009562.2 Cucumis melo HOM05D007830 ORTHO05D009947 9.0e-187 657.9 729 83.1
CsaV3_3G038190 Cucumis sativus L. HOM05D007830 ORTHO05D009947 1.6e-180 637.1 729 82.2
Sed0014604 Sechium edule HOM05D007830 ORTHO05D009947 8.4e-169 598.2 728 78.8
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 1.2e-82 312.0 729 37.0
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 1.7e-81 308.1 726 45.9
Cfa006760 Carpinus fangiana HOM05D007830 ORTHO05D009947 1.1e-80 305.4 729 59.5
QL03p010264 Quercus lobata HOM05D007830 ORTHO05D009947 3.6e-79 300.4 728 58.0
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 5.2e-78 296.6 725 56.1
TWI56G0273 Tripterygium wilfordii HOM05D007830 ORTHO05D009947 9.0e-78 295.8 727 53.0
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 3.8e-76 290.4 725 53.8
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 4.2e-75 287.0 725 54.2
Ca_10196_v3 Cicer arietinum L. HOM05D007830 ORTHO05D009947 7.1e-75 286.2 680 54.1
Haze_03995 Corylus avellana HOM05D007830 ORTHO05D009947 2.1e-74 284.6 719 59.8
QL03p010498 Quercus lobata HOM05D007830 ORTHO05D009947 2.3e-73 281.2 728 56.9
Duzib128G1385 Durio zibethinus HOM05D007830 ORTHO05D009947 5.1e-73 280.0 646 51.9
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 7.3e-72 276.2 728 48.4
Lj5g0007590 Lotus japonicus HOM05D007830 ORTHO05D009947 1.6e-71 275.0 679 55.5
Phvul.007G204600 Phaseolus vulgaris HOM05D007830 ORTHO05D009947 2.1e-71 274.6 724 50.6
Psat6g155440 Pisum sativum HOM05D007830 ORTHO05D009947 2.4e-70 271.2 727 52.4
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 3.1e-70 270.8 681 46.7
Thecc.05G329100 Theobroma cacao HOM05D007830 ORTHO05D009947 9.0e-70 269.2 698 48.4
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 4.2e-67 260.4 724 53.2
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 9.3e-67 259.2 725 55.7
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 6.0e-66 256.5 725 55.6
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 2.3e-65 254.6 679 46.1
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 8.7e-65 252.7 691 48.2
VMungo0720G1493 Vigna mungo HOM05D007830 ORTHO05D009947 6.9e-62 243.0 728 52.5
MD04G1187000 Malus domestica HOM05D007830 ORTHO05D009947 1.3e-60 238.8 725 53.7
Prupe.6G305500 Prunus persica HOM05D007830 ORTHO05D009947 5.5e-59 233.4 725 57.4
Gohir.D11G285900 Gossypium hirsutum HOM05D007830 ORTHO05D009947 9.3e-59 232.6 683 54.3
Gorai.007G309100 Gossypium raimondii HOM05D007830 ORTHO05D009947 9.3e-59 232.6 683 54.3
PGR031G1570 Punica granatum HOM05D007830 ORTHO05D009947 2.7e-58 231.1 727 49.2
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 3.9e-57 227.3 687 45.4
CANSAT54G0214 Cannabis sativa HOM05D007830 ORTHO05D009947 9.7e-48 196.1 725 49.8
FAN05G5807 Fragaria x ananassa HOM05D007830 ORTHO05D009947 2.8e-47 194.5 725 53.5
Lalb_Chr18g0046201 Lupinus albus HOM05D007830 ORTHO05D009947 1.1e-46 192.6 367 48.0
RcHm_v2.0_Chr3g0458391 Rosa chinensis HOM05D007830 ORTHO05D009947 1.1e-46 192.6 729 53.8
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 3.1e-46 191.0 729 48.3
FAN02G3946 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.2e-45 189.1 726 53.3
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 7.6e-45 186.4 725 53.1
AUR62000469 Chenopodium quinoa HOM05D007830 ORTHO05D009947 1.7e-44 185.3 735 37.4
DCAR_029288 Daucus carota HOM05D007830 ORTHO05D009947 1.7e-44 185.3 685 45.0
Gohir.A11G275500 Gossypium hirsutum HOM05D007830 ORTHO05D009947 1.1e-43 182.6 683 54.8
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 1.4e-43 182.2 729 44.0
AUR62006810 Chenopodium quinoa HOM05D007830 ORTHO05D009947 1.3e-41 175.6 731 41.9
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 3.9e-41 174.1 729 35.1
SGA_v2.0_scaffold117G32413 Striga asiatica HOM05D007830 ORTHO05D009947 1.7e-39 168.7 654 52.0
Peaxi162Scf00357g00014 Petunia axillaris HOM05D007830 ORTHO05D009947 3.7e-39 167.5 618 42.2
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 1.1e-38 166.0 730 37.0
Cc02_g35800 Coffea canephora HOM05D007830 ORTHO05D009947 1.4e-38 165.6 729 46.4
FvH4_6g08430 Fragaria vesca HOM05D007830 ORTHO05D009947 1.3e-36 159.1 725 51.9
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 2.2e-36 158.3 729 48.0
FAN14G2917 Fragaria x ananassa HOM05D007830 ORTHO05D009947 1.9e-35 155.2 725 51.7
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 4.2e-35 154.1 408 56.1
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 4.2e-35 154.1 725 48.8
Ciclev10011168m.g Citrus clementina HOM05D007830 ORTHO05D009947 1.2e-34 152.5 456 53.1
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 1.6e-34 152.1 725 52.6
MD12G1200400 Malus domestica HOM05D007830 ORTHO05D009947 1.0e-33 149.4 453 54.3
unitig_578.g15943 Utricularia gibba HOM05D007830 ORTHO05D009947 1.5e-32 145.6 655 49.8
Eucgr.H01319 Eucalyptus grandis HOM05D007830 ORTHO05D009947 5.9e-29 133.7 427 52.5
Aqoxy2G02518 Aquilegia oxysepala HOM05D007830 ORTHO05D009947 7.7e-29 133.3 352 47.7
Hund21836 Selenicereus undatus HOM05D007830 ORTHO05D009947 4.2e-27 127.5 725 50.2
PGSC0003DMG400018287 Solanum tuberosum HOM05D007830 ORTHO05D009947 1.6e-26 125.6 458 33.0
HanXRQChr03g0088351 Helianthus annuus HOM05D007830 ORTHO05D009947 1.0e-25 122.9 693 39.0
Ah.10g026910 Amaranthus hybridus HOM05D007830 ORTHO05D009947 1.4e-25 122.5 738 46.6
Lj5P319T39 Lonicera japonica HOM05D007830 ORTHO05D009947 2.3e-25 121.7 111 57.7
CDE05G0555 Ceratophyllum demersum HOM05D007830 ORTHO05D009947 9.7e-24 116.3 381 41.5
Lsat_1_v5_gn_7_63920 Lactuca sativa HOM05D007830 ORTHO05D009947 1.3e-23 115.9 729 34.2
Atru.chr12.1550 Acer truncatum HOM05D007830 ORTHO05D009947 2.2e-23 115.2 184 35.3
Zm00001eb060630 Zea mays HOM05D007830 ORTHO05D009947 2.2e-23 115.2 375 44.3
Actinidia09334 Actinidia chinensis HOM05D007830 ORTHO05D009947 3.7e-23 114.4 90 60.0
Nitab4.5_0002485g0040 Nicotiana tabacum HOM05D007830 ORTHO05D009947 3.7e-23 114.4 454 38.8
Sopen01g044630 Solanum pennellii HOM05D007830 ORTHO05D009947 2.2e-20 105.1 461 41.4
Glyma.20G092800 Glycine max HOM05D007830 ORTHO05D009947 2.5e-19 101.7 175 35.4
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 1.8e-17 95.5 98 48.0
GSVIVG01031321001 Vitis vinifera HOM05D007830 ORTHO05D009947 1.5e-16 92.4 171 31.0
PSO210G0421 Papaver somniferum HOM05D007830 ORTHO05D009947 2.8e-15 88.2 94 46.8
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 1.1e-14 86.3 171 28.1
ATR0796G327 Amborella trichopoda HOM05D007830 ORTHO05D009947 1.2e-13 82.8 83 48.2
PGR031G2669 Punica granatum HOM05D007830 ORTHO05D009947 3.5e-13 81.3 266 24.1
Solyc01g101150.3 Solanum lycopersicum HOM05D007830 ORTHO05D009947 5.9e-13 80.5 100 40.0
Os03g0795400 Oryza sativa ssp. japonica HOM05D007830 ORTHO05D009947 2.9e-12 78.2 100 42.0
Dinv44256 Davidia involucrata HOM05D007409 ORTHO05D009264 8.8e-09 66.6 134 28.4
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 5.7e-08 63.9 134 29.9
HanXRQChr14g0427751 Helianthus annuus HOM05D007409 ORTHO05D009264 4.8e-07 60.8 135 30.4
Manes.11G109300 Manihot esculenta HOM05D007409 ORTHO05D009264 1.8e-06 58.9 139 27.3
Ciclev10004501m.g Citrus clementina HOM05D007409 ORTHO05D009264 5.4e-06 57.4 109 33.0
DCAR_030451 Daucus carota HOM05D007409 ORTHO05D009264 5.4e-06 57.4 109 27.5
Aqoxy2G02657 Aquilegia oxysepala HOM05D007409 ORTHO05D009264 7.0e-06 57.0 143 25.9


User provided reference genes

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